NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315907_10006077

Scaffold Ga0315907_10006077


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10006077 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12911
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (97.06%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041756Metagenome159N
F056333Metagenome137N
F061793Metagenome131N
F088784Metagenome / Metatranscriptome109Y
F101020Metagenome102N
F105161Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1000607715F105161AGGAGGMLSEVDIRDFDKQPVQPLYSVKPKSYVQCPRTEAVYYFDHIDGMYSYCLDMFGDTIHLVAWMDVIPLARKPE
Ga0315907_100060772F041756N/AMKLHELEDLIMAAWMTREDIDSVLWVLMDRVKKPDEDEISNLLIGLHSLHDARMTKLFQGYDTVLKTNKVIYKGYDILKNPPTL
Ga0315907_1000607721F101020GAGMNQVIKTTEGYMVLMSDETYACDAQGNNTWDTFNEARDVLFTLTVTKQEQTARIFGQHYAYVHPSYTKHWERKEIASTFYTPKSKVWYAFIRGMERHEQFPVIAKGAKADIRGVLKNLTESADKYIEDGTWIEALSKDIADAKYIMEHNL
Ga0315907_1000607725F061793AGGTGGLPMARQCSTIHGGDMRYRYKFIVCYPNNTNPVATFKTLKAARAHSDKIVEDQLFEHQFFGNKVYLPFIKRELILKGNTNGQTRTTS
Ga0315907_1000607728F088784GGAGGMERIVKARYKGICCKTGAIINVGDIIVYDSFTRKAWLTVDEDRMVVHVCSR
Ga0315907_100060776F056333GGAMTELNREEIEAVVAQELEFLLRWESSLPEPSQDTELIKAAMRVLQEFKVIK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.