NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10002422

Scaffold Ga0315907_10002422


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10002422 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23487
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (52.78%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010682Metagenome300Y
F015724Metagenome252Y
F023840Metagenome208Y
F047028Metagenome150N
F051095Metagenome144Y
F080002Metagenome115N
F085646Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1000242218F015724N/AMPFKRKFRPDFNLKDFSILYDYNYASMWTRWRRGYELYMYANQAYVGLNYSFRYWTTGTVGVGAALPGVCYMYPSMSQDMAMRMVAIRPRDSFNFLDFGYSIKSVTKTSGTTYAVELSSNFGPPISFFTGEILSDRFAANGTEKTTYNNYVVIGVGNGTTPITPGFAPIFNSIFISLDTNNSWSVIDNETLAAPAGLPTVGDYFTTEMRFGCNCPDYLAREDFNLYEYSLKRKYPYTLPQDLKPGLYDAGKDFLASRTENSRDLPGFTRDFGFLYVKRLLNLPSYTDGSKVYSDPNLIYFAPRWCKHIYASFWDMQNRFGTDMFPPAWLAQPTDEPMDDKYREFFDLNLAKQTTFEKRQQHLRWWEKYSPSKNTVPVHMMYPDMHPTMVKTLNFDTLASGTSTAMTASGFEMFTIDQYDPFAPPDPDVTPKLDGGTYSNGVLVSGASLIYDGGSYANGNLIPYPSLPSLINGGVY
Ga0315907_1000242223F023840N/AVKEEHGQLRVGLTLEDDFTLTRLKNAAQQLKGEARDQYLWKTIFKFVCRERAFKSVMEEIGVVIDTNVDIFEDLTEEKD
Ga0315907_1000242229F047028GGAGMSDLSRGAAALIKNLFSGNETERMISAGVVRTILSDMTRLYFENRAALGEGILVFNPENPETSKYLTKSDLENDLAVAQEGMDEKAEALFSKIIRVIEKESESDLALIAMVQSSEICVHLVDPKEANKKIDEYSNGLIY
Ga0315907_1000242230F085646GGAGMDITREIKDIRDALNSIEASLQLLVAQKGGKITNAFVSKKIVSQRLNVPAVTIDKLIHQGIASKGESGLVEGRHFCKTDPTERNSSKFLYDIHAITQAAWSNFTYV
Ga0315907_1000242231F080002N/AVITTYTSTAYSANSTAELRRPCLWEDEFKIDNLPTWIYTDNQPPKDTRDCEAKISSLEYTIRDIELQIEIRELELKTGNSRHSSAFDYEKWKVGALKAKQTHYYLLNAYTYWLIKNERRELDSPGKLDKLIELLIEDPSDFETKAKALLN
Ga0315907_100024226F051095GAGMSSHIERVLTVFFEDPESSIACFSGSITESLTHPRGVKKVIPYLIKASLVGYMLATFVSPAIEERFKLTKNEAIATSFIIGYAGIRILAAVERLAEKELERRLGKNDDNVS
Ga0315907_100024227F010682GGAGMVYAPQTNWKYDKNLYHPIQSGPQRTGDDLDLRDTYLTISSGYVTPLGVQQTWLGVIDEGADFGRIPVGPPNISGYFTTEWRAVPPAISGYWTNYENTQPHASGLLDSYVGFRAQGLYSTANATVQTALGPQPGLRNFGTHTWYGEQIPDNQLYSPFQTPSSNDNTLDGGGITGGGVTHPSVASPTLTNPTNDTSGSRAAWVYHYPIYCQSFTETRYSGVPGQMGSPVRNSYRGKSLRYVPNYGSVYGVLGEGVRNMVRRFSPGTKI

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