Scaffold Ga0315907_10002422

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10002422
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23487
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (52.78%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010682	Metagenome	300	Y
F015724	Metagenome	252	Y
F023840	Metagenome	208	Y
F047028	Metagenome	150	N
F051095	Metagenome	144	Y
F080002	Metagenome	115	N
F085646	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000242218	F015724	N/A	MPFKRKFRPDFNLKDFSILYDYNYASMWTRWRRGYELYMYANQAYVGLNYSFRYWTTGTVGVGAALPGVCYMYPSMSQDMAMRMVAIRPRDSFNFLDFGYSIKSVTKTSGTTYAVELSSNFGPPISFFTGEILSDRFAANGTEKTTYNNYVVIGVGNGTTPITPGFAPIFNSIFISLDTNNSWSVIDNETLAAPAGLPTVGDYFTTEMRFGCNCPDYLAREDFNLYEYSLKRKYPYTLPQDLKPGLYDAGKDFLASRTENSRDLPGFTRDFGFLYVKRLLNLPSYTDGSKVYSDPNLIYFAPRWCKHIYASFWDMQNRFGTDMFPPAWLAQPTDEPMDDKYREFFDLNLAKQTTFEKRQQHLRWWEKYSPSKNTVPVHMMYPDMHPTMVKTLNFDTLASGTSTAMTASGFEMFTIDQYDPFAPPDPDVTPKLDGGTYSNGVLVSGASLIYDGGSYANGNLIPYPSLPSLINGGVY
Ga0315907_1000242223	F023840	N/A	VKEEHGQLRVGLTLEDDFTLTRLKNAAQQLKGEARDQYLWKTIFKFVCRERAFKSVMEEIGVVIDTNVDIFEDLTEEKD
Ga0315907_1000242229	F047028	GGAG	MSDLSRGAAALIKNLFSGNETERMISAGVVRTILSDMTRLYFENRAALGEGILVFNPENPETSKYLTKSDLENDLAVAQEGMDEKAEALFSKIIRVIEKESESDLALIAMVQSSEICVHLVDPKEANKKIDEYSNGLIY
Ga0315907_1000242230	F085646	GGAG	MDITREIKDIRDALNSIEASLQLLVAQKGGKITNAFVSKKIVSQRLNVPAVTIDKLIHQGIASKGESGLVEGRHFCKTDPTERNSSKFLYDIHAITQAAWSNFTYV
Ga0315907_1000242231	F080002	N/A	VITTYTSTAYSANSTAELRRPCLWEDEFKIDNLPTWIYTDNQPPKDTRDCEAKISSLEYTIRDIELQIEIRELELKTGNSRHSSAFDYEKWKVGALKAKQTHYYLLNAYTYWLIKNERRELDSPGKLDKLIELLIEDPSDFETKAKALLN
Ga0315907_100024226	F051095	GAG	MSSHIERVLTVFFEDPESSIACFSGSITESLTHPRGVKKVIPYLIKASLVGYMLATFVSPAIEERFKLTKNEAIATSFIIGYAGIRILAAVERLAEKELERRLGKNDDNVS
Ga0315907_100024227	F010682	GGAG	MVYAPQTNWKYDKNLYHPIQSGPQRTGDDLDLRDTYLTISSGYVTPLGVQQTWLGVIDEGADFGRIPVGPPNISGYFTTEWRAVPPAISGYWTNYENTQPHASGLLDSYVGFRAQGLYSTANATVQTALGPQPGLRNFGTHTWYGEQIPDNQLYSPFQTPSSNDNTLDGGGITGGGVTHPSVASPTLTNPTNDTSGSRAAWVYHYPIYCQSFTETRYSGVPGQMGSPVRNSYRGKSLRYVPNYGSVYGVLGEGVRNMVRRFSPGTKI