Scaffold Ga0315907_10001207

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10001207
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35549
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (64.29%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004111	Metagenome / Metatranscriptome	452	Y
F005175	Metagenome / Metatranscriptome	409	Y
F031850	Metagenome	181	N
F081080	Metagenome	114	N
F105047	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000120722	F031850	AGTAG	MHQDDDDYYNANVKAIVFIERDNSITVKFTGFQDKEHSAIFSSWLMMLLNIENAIINDSQSKSIH
Ga0315907_1000120735	F005175	GAG	MIDQELTVEIVCEMYEEKILVLKKEIDRLNEEVQALNLQLKKERENNEIKTSXFIFWHRW
Ga0315907_1000120736	F105047	GAGG	MKHINYDKVIVEWLDISSDGCDEAWNTEEQLKDLVPALCTTIGYLYEDNKDWIKTFATYSFNSDQTLDFGDCVCIPKGVVRSIRKLEN
Ga0315907_1000120741	F004111	AGG	MIDKIKQVNDLCAANGSYVNQHGKKTVSAWSKIKYFREVFGTEYGINCMMIEHTDRYVLMKCLIMGYDPERIISTGYSKQYRDKPGYIEIAETFAITRALSFMGLMLQDITSKEEYEELDIPVHPMDIKGTTSANSNRYDVEAVQKILKNINYAPHTAKLDFLWRANKDLLEQIKINDLNTYQSIVNKFDSKRDEITTQNEV
Ga0315907_1000120756	F081080	N/A	MVNGNCLEVMSTGKKFDTFRECTIAGYEFIAEQNKIFPIDQFEKTKPSFHFDCIETAEQS