NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315907_10001059

Scaffold Ga0315907_10001059


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10001059 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37779
Total Scaffold Genes95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)69 (72.63%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F001280Metagenome / Metatranscriptome732Y
F003582Metagenome / Metatranscriptome478Y
F008131Metagenome / Metatranscriptome338Y
F037227Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1000105915F037227AGGMTKQVTVLEGIIEDVASELYQKLWNAIPADEQTEDSSRAIGLNSKETTLFVIQRFMDKFNAAAEELKDK
Ga0315907_1000105922F001280N/AMCVECGCQSVGSETGIVSAPMLDVTRDGEAGLTLNMTSTPEQTRRFINE
Ga0315907_100010593F003582N/AMNTYRVKIEVDAEVQAFNEDDAIDYVNDIFGVDEEIKSIKVVNVKEK
Ga0315907_100010597F000473GAGGMFIDKTAEKQAEHFKYGINQWTGEPNKPVFYTKEMALKVREIKKPVADLLMDIVQYPDFLAIRLYEDNFVMYDGIKKEMVIDYVSKIKKLIESYGVRCELEGQPSRGIL
Ga0315907_100010599F000671GAGGMEKVLCYSCNKSKNKLNVKRSVLFPINLLMCESCVLAKFEPRWVLILAGRQNGPDVVKEFIIKRKYLGEEISAAELLV
Ga0315907_1000105994F008131AGGGGGMSVKRLVPLHAVVLDTDPETGRIGDIYYNSVSEELRYFDGTAWNAVGGAITGILDHIHTYDGAIFSVDSIEVPASGVVDGGTP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.