NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315907_10000282

Scaffold Ga0315907_10000282


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10000282 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)76029
Total Scaffold Genes142 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)102 (71.83%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F001176Metagenome / Metatranscriptome756Y
F001280Metagenome / Metatranscriptome732Y
F008814Metagenome / Metatranscriptome327Y
F010085Metagenome / Metatranscriptome308Y
F071247Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_10000282118F010085AGGAGLRQIQYVSQYIALSEEGLVPRLECPMDQGLLQSNLDLEDNIYLYCLSCSYKKFIGEKLYNDIKERVNKNV
Ga0315907_1000028236F000473N/AMFIDKNKNHFKHGINQWTGEPNKPVFYTPEMSKAIRGITKPVNNLQMDIVKYPEFLAIRLYEDNFIQFEGVKKEMVIDYVLKVKKLLESYGVRCELEGVPSERILR
Ga0315907_1000028238F000671GAGGMDKVLCYSCNKTKNKLNLKKSTLLPINLFMCEGCIESKFEPRWLIVITGRQSGPESVREFVLKKKYVGDEISASELLI
Ga0315907_1000028244F008814N/AMANITVLEEIIKEVSAELYQKWYNSVPETEKNEEASQAMAKNAGETTFFVIQTFMNKFNSAAEELKNK
Ga0315907_1000028253F001280AGGMCYECGCESVGSETGIVSAPMLDVTRDGEAGLTLNMTATPQQRTSFINE
Ga0315907_1000028254F001176N/AMSDNGTGMQTPPNNEPSGAVTSQEATRKNPNQGKFRSGIANQRSMTRVDRNKHGIRRETNMGPKKTGRPKKV
Ga0315907_100002827F071247GGAGGMGSNNKIPFNKTIIKDGRIIRLRKDGTIKADLGPYKTNSKKVK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.