Scaffold Ga0315328_10323340

Overview

Basic Information

• Taxon OID: 3300031757
• Scaffold ID: Ga0315328_10323340
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 900
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052655	Metagenome / Metatranscriptome	142	Y
F056674	Metagenome / Metatranscriptome	137	Y
F063766	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315328_103233401	F056674	N/A	LIKALQRERVGLLVKITDKHYPGRSHSYFGYHTDLAFEPTEEPVTVAEFLKECEDSVGKSFITADHFEEFYKDYIMQISAPLWVSTLGQASTKGIVDLVPTDGYIKLVTENIEEEEDVSE
Ga0315328_103233402	F063766	AGGAGG	MSLNKQKKLEYIEQILEEIKNGSIDDKEDSILLEVALAFMDDLKYDILGIKKGGSDGGST
Ga0315328_103233404	F052655	AGGAG	MTVLILIAGLAFGMFTYEPSWFDTRPHYYYLTYNSKSECQEAREMVKDKGTVCTDK