Scaffold Ga0315328_10241741

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315328_10241741

Scaffold Ga0315328_10241741

Overview

Basic Information
Taxon OID	3300031757 Open in IMG/M
Scaffold ID	Ga0315328_10241741 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1057
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.7468	Long. (^o)	-122.0193	Alt. (m)		Depth (m)	200
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031481	Metagenome	182	Y
F081210	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315328_102417411	F081210	GGAG	MKPGDLVRQAPNIFADRKVAGKKMLVLKVMDGGPNRGETVLTLLEGKERIWHYGELELWRETR
Ga0315328_102417413	F031481	GAGG	MKVGDLVKRQEGWQGWKRQQLGLVVNVDRAVVKVQWSADYGTFSHPITSLELLNEAG

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