Scaffold Ga0307475

Basic Information
Taxon OID	3300031754 Open in IMG/M
Scaffold ID	Ga0307475_10071553 Open in IMG/M
Source Dataset Name	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2652
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2652

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Indiana

Coordinates

Lat. (^o)

39.0844

Long. (^o)

-86.4705

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000092	Metagenome / Metatranscriptome	2385	Y
F004291	Metagenome / Metatranscriptome	445	Y
F040290	Metagenome / Metatranscriptome	162	Y
F046497	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307475_100715532	F000092	GAG	VKQHLGRQSGVQTVEVSLLDGKVEVTPKEDGQIDPAQLLKATYDSGVTAAEMDMIARGKIVKDSSGGIALQVEPNRSFALTPNELSKGLEALADIPTMVTVRGQLFKKPAGKKKADSSAPLKLLILEVQKKE
Ga0307475_100715533	F004291	AGGGGG	MSKKEMALLALLVSIVSPVAQAQIKHIEMRVEGMT
Ga0307475_100715534	F046497	GGAGG	VRTRNSYFIGRFARTAAWFFLLSCVSAAKAQGPAPETAPPLFPGGGLISYNSVFTTRGLMPRISSGIPATAFPTFSHAADFNFTWGFHRNLDLAVLVPMVTNHFDGGKAPAVGGTGLGDAMVLVKYRFYRRDSERGTTQASVTFGPKVPTGRTDLTDTNGKRLPASLQPGSGSTDFFLAANWTYTGLFNLKRLVADEDFHSLIRSQGTQSTNIGSDIESRFWLSYRPYESKNVAREWFIGPALTWLHSQDEHIAGVTQTGSGGDALLAGITNFVGLRPGMHVWLGMEWDVIHSSGAMFMPVRRHISFGITQQFRVHH
Ga0307475_100715535	F040290	N/A	MRSARPIFLTVLTIALAAYALDCGAAVTPEQAMQCCDSVPCSSHGHHAEDCCKAMQSMHAPFVQPSPAHASYSPFVFAALPVTGESHELDLSNGVIAANGHAPPIFYASAPLPLRV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307475_10071553

Overview

Ecosystem & Geography

Associated Families

Sequences