NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000279

Scaffold Ga0307477_10000279


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000279 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)65119
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (70.49%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003832Metagenome / Metatranscriptome466Y
F005268Metagenome / Metatranscriptome406Y
F025325Metagenome / Metatranscriptome202Y
F027913Metagenome193Y
F075880Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_1000027922F075880GGALYNVELVRRICCDINNAKDDAQREQELLSLLRAVIREDQEEVRVRMAFLAKQYADVISDANAAD
Ga0307477_1000027927F027913GAGGMSYSESRNHFEKARINTADAVTIEMLDGLKHLSHAIEEDVRTLEQHIRNIQESADRHRTHSLPVEIVGKVSF
Ga0307477_1000027929F003832N/AMKSTVKLRRSQANWPPEEGQIISFRSSSGSETTIFKEVRWGLVWRDFILQDGRVIPEHRISGCPQPQVWRKTNEVTDNEREECEERLLSMAEAGMDPRKRDQAFWAELNQYLAYTYLRFKQTGCEVEDTER
Ga0307477_1000027930F005268AGGAGVSRSDDETEEQRAWRVLSEAGLVEIRLDEFAEKIGDVKRIVIVRLRELLDFNTGNKERESAAYSLGTLRGLELKVLANPPKPPDPSEM
Ga0307477_1000027931F025325AGGAGGMLRDSPKRPKKTWEELTTAASMETDPEKLGTILEEILAALEERQRTLSQPPNAFAGNRQL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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