NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000107

Scaffold Ga0307477_10000107


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000107 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)122380
Total Scaffold Genes113 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)77 (68.14%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Associated Families9

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001591Metagenome / Metatranscriptome667Y
F011510Metagenome / Metatranscriptome290Y
F015374Metagenome / Metatranscriptome255Y
F023229Metagenome / Metatranscriptome211N
F027602Metagenome / Metatranscriptome194Y
F040210Metagenome / Metatranscriptome162Y
F050509Metagenome / Metatranscriptome145Y
F074609Metagenome119Y
F081564Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_1000010710F011510GAGGMGDSVNTYSLLVGLAAFAGWTLCRFPVTRRMGWVHWLGGVGILALFFSIASPDDDAFQQELIRPTPPFATVSSHTKVAQRGSLADLSINAFAAAGDLIRALRTGRPVVMDQPLDRLTHFQAPISIHSPPIAS
Ga0307477_1000010718F081564AGGAGMNFLSRFFGRGCSHRFTWPRVDAYGRHYQICPLCGTAYEYDWRMMRRTDRLLVTNGKHPPVSTHTRLPGPVN
Ga0307477_1000010721F015374AGTAGGMDPEPVVAASPTPAVNNENKPTVEELPLGLIGLVFAAPGTSYFSNFEVFVAKRRVGKDQLQLVKLVYEFLPYQRRLSEYDLNNLPPRVIKLRVTPDPSCDESLGQMIQSHSDPPPSAREYPKLPAALRSSDLNAVLPCYRTTADDFQKAMSRSH
Ga0307477_1000010743F040210AGGAGMKRSLRALLLLVGLVGTFAYAAVPRDPPRSGPMPLCPPTHPLCNA
Ga0307477_1000010752F050509GGAMSDEQLDQLCEDCGQTFSDFLHEMADQNAKVTTCPKCGKIHEFPSKAAKSGVPSLKEVI
Ga0307477_1000010753F074609GAGMSDEIDMLCEECGQTFSAFLHEMADKNEKVVCPNCRASRDCNSPKAEPVAGARSVRRIS
Ga0307477_1000010755F001591GGAGMDRRKERRLNLELPVRIWGVDRMARPFAEMVRVRDVSNRGAVLIGLRAKVQTGEVLDVQHGAARAQFRIVWISLSGEAGIQALAFEPPILGIGLPKVFEMVGTG
Ga0307477_100001076F023229GGAVDASHEESKRWSSLESREPELNQAIVDVSREDFLVGNFDLESLFSLSVGAFYSDDCVLWLGTEEMIGKTAAFQRMASALEPIYTLFEMGMAFVESFRATANSQDSVGNFITDWEAVLGRTQLTSITFRWRTVRAWKDRVVIAERIESLPS
Ga0307477_1000010768F027602GGAMAKRSLRILKRVSNIPSLGICESCHTQFSADPRQLGQAGVQQQFNAHKCEAVLNAVPSTKEAPKKDAAKKEAVKVDGR
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