Scaffold Ga0315293_10056787

Overview

Basic Information

• Taxon OID: 3300031746
• Scaffold ID: Ga0315293_10056787
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3386
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5395
  • Long. (^o): -110.3891
  • Depth (m): 61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F025652	Metagenome	200	N
F045085	Metagenome / Metatranscriptome	153	Y
F055439	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315293_100567872	F045085	N/A	MNKLYKVIDLTIGLIMGSLFAIGIILVITIFFAVLIPSIFYFTVREVLKQLTKK
Ga0315293_100567873	F055439	N/A	MNKISESIIVTYAKALRRIQTEQVDPYIELIEKELIKLYPELKDREDNALNWAYDIINADSTAEVVETLDRIKQIFEEEYKEKWVCCICGKNTYNVDCEYLAGVDHLSCLTTEELKKSNPLKNKDEFVEIKNQFVNMKMYIKQLEDHIQRLEEQYDEPTN
Ga0315293_100567878	F025652	N/A	MWGLPAELSCHSTEIVFEFMNNKTYFYRVAHTNCTFYGRYPMGPYTFFDATRRLLNNQKVPIGVSECTYEKFYEFVSKEVVEYKKFNINNFNLKWVPTLPNAWRPGPFEDIDLREKMIDRMGTMTKYGKFHLYGFDSLMQALQWYNNQEELQFLEDNQFRMYKFQIKSKNMIVGKTQSVYFPDINDDMDMLWISSTKLSDLNKSININNTTQSINKLFV
Ga0315293_100567879	F000962	N/A	MNIHVSDEIKAKYPHMEFRGRQRQLNDRTIIEAYNNATNQTFHYSFDEDFFWFAGQIPDYKLSSAN