Scaffold Ga0307516_10000075

Overview

Basic Information

• Taxon OID: 3300031730
• Scaffold ID: Ga0307516_10000075
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 107790
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (79.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 47.5302
  • Long. (^o): -121.825

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059161	Metagenome / Metatranscriptome	134	Y
F084158	Metagenome	112	Y
F093393	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307516_1000007522	F093393	GGAG	LTPKNRKSATRSRSTPAAGPQLVEIRGDLQSAIAKFKALGCEDTMILVEFWHALDSVNGEDFNDV
Ga0307516_1000007539	F084158	GGA	MPNRDRKKKPISFRSRGSSPLTSGFDDNRELLVRLVEELQQVGMESMEALGVSRKEQMAAYRRAVKGAAPEDRPSTLLMDRIFAIGNLLSSWRRDKRYVDRNGSPRVLPISGKGATLETLARKFVPTMPLDEVVTVITRHGGATTYRGDKVALVGSTVVLHPKTAEMTLASLVTQFRRVASTMLTNASLPESKKGLGRFERQVTGVLSEREFNKYARTLRPQFQDLCDRAEAGLKLADLKGRNGKTCGIAIFVFRDD
Ga0307516_1000007546	F059161	N/A	MDGRVRNVIVESGLSRTARFTGSAATGALVVMIRACALVLFMVMSMAEPFLAVVLSALAIGCFFVAVLFGFIFHAPFPHRWFVLGASVVFLLLYVLYRFVMLGVQRLLR