Metagenome Family F093393

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093393
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	66 residues
Representative Sequence	VSPKKRNEPSATRNRSSPPPGAQLVEIRAEFRAAITKLKALGCEDSMVLVEFWHALDCVNGEDCGDL
Number of Associated Samples	84
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.00 %
% of genes near scaffold ends (potentially truncated)	29.25 %
% of genes from short scaffolds (< 2000 bps)	74.53 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (70.755 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (15.094 % of family members)
Environment Ontology (ENVO)	Unclassified (22.642 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.604 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.74% β-sheet: 0.00% Coil/Unstructured: 65.26%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF05857	TraX	50.00
PF02586	SRAP	5.66
PF02534	T4SS-DNA_transf	1.89
PF02604	PhdYeFM_antitox	0.94
PF00486	Trans_reg_C	0.94
PF02776	TPP_enzyme_N	0.94
PF13561	adh_short_C2	0.94
PF08028	Acyl-CoA_dh_2	0.94
PF02599	CsrA	0.94
PF00271	Helicase_C	0.94
PF04679	DNA_ligase_A_C	0.94
PF00437	T2SSE	0.94
PF00141	peroxidase	0.94
PF03626	COX4_pro	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	5.66
COG3505	Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase	Intracellular trafficking, secretion, and vesicular transport [U]	1.89
COG0376	Catalase (peroxidase I)	Inorganic ion transport and metabolism [P]	0.94
COG1551	sRNA-binding carbon storage regulator CsrA	Signal transduction mechanisms [T]	0.94
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.94
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.94
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.94
COG3125	Heme/copper-type cytochrome/quinol oxidase, subunit 4	Energy production and conversion [C]	0.94
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.75 %
Unclassified	root	N/A	29.25 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.75 %
Unclassified	root	N/A	29.25 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	70.75 %
Unclassified	root	N/A	29.25 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	62.26 %
Unclassified	root	N/A	29.25 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.25 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	26.42 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.25 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	22.64 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	3.77 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.25 %
unclassified Burkholderiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales	14.15 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	5.66 %
Methylophilaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae	3.77 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.89 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.25 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	14.15 %
Methylotenera	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylotenera	3.77 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	1.89 %
Massilia group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group	0.94 %
Sphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	0.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.25 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	14.15 %
unclassified Methylotenera	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylotenera → unclassified Methylotenera	3.77 %
Sphingobium phenoxybenzoativorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → Sphingobium phenoxybenzoativorans	0.94 %
unclassified Variovorax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax	0.94 %
Massilia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia	0.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.25 %
Burkholderiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	14.15 %
Methylotenera sp. G11	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylotenera → unclassified Methylotenera → Methylotenera sp. G11	3.77 %
Variovorax sp. URHB0020	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. URHB0020	0.94 %
Sphingobium phenoxybenzoativorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → Sphingobium phenoxybenzoativorans	0.94 %
Massilia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia	0.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001159\|JGI12650J13346_1000665	All Organisms → cellular organisms → Bacteria → Proteobacteria	1367	Open in IMG/M
3300001593\|JGI12635J15846_10002596	All Organisms → cellular organisms → Bacteria → Proteobacteria	15794	Open in IMG/M
3300001593\|JGI12635J15846_10381701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	855	Open in IMG/M
3300003350\|JGI26347J50199_1011697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	890	Open in IMG/M
3300004080\|Ga0062385_10239902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	1004	Open in IMG/M
3300004082\|Ga0062384_101165379	Not Available	559	Open in IMG/M
3300004092\|Ga0062389_100930058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia	1053	Open in IMG/M
3300004092\|Ga0062389_101864723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	780	Open in IMG/M
3300004152\|Ga0062386_100453646	All Organisms → cellular organisms → Bacteria	1037	Open in IMG/M
3300005537\|Ga0070730_10000063	All Organisms → cellular organisms → Bacteria → Proteobacteria	132083	Open in IMG/M
3300005952\|Ga0080026_10021437	All Organisms → cellular organisms → Bacteria	1578	Open in IMG/M
3300005995\|Ga0066790_10455625	Not Available	547	Open in IMG/M
3300006086\|Ga0075019_10232752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	1097	Open in IMG/M
3300006893\|Ga0073928_10056907	All Organisms → cellular organisms → Bacteria → Proteobacteria	3479	Open in IMG/M
3300009633\|Ga0116129_1105921	Not Available	812	Open in IMG/M
3300009645\|Ga0116106_1063957	All Organisms → cellular organisms → Bacteria → Proteobacteria	1213	Open in IMG/M
3300009650\|Ga0105857_1289673	Not Available	501	Open in IMG/M
3300009661\|Ga0105858_1026247	All Organisms → cellular organisms → Bacteria	1494	Open in IMG/M
3300009698\|Ga0116216_10409994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	822	Open in IMG/M
3300009709\|Ga0116227_10337477	Not Available	1151	Open in IMG/M
3300009762\|Ga0116130_1063978	All Organisms → cellular organisms → Bacteria	1157	Open in IMG/M
3300010341\|Ga0074045_10207885	All Organisms → cellular organisms → Bacteria → Proteobacteria	1308	Open in IMG/M
3300010341\|Ga0074045_10495245	Not Available	786	Open in IMG/M
3300010379\|Ga0136449_100049251	All Organisms → cellular organisms → Bacteria → Proteobacteria	9509	Open in IMG/M
3300010379\|Ga0136449_100644948	All Organisms → cellular organisms → Bacteria → Proteobacteria	1792	Open in IMG/M
3300010379\|Ga0136449_101298931	Not Available	1134	Open in IMG/M
3300011271\|Ga0137393_10600220	Not Available	944	Open in IMG/M
3300012685\|Ga0137397_10694890	Not Available	756	Open in IMG/M
3300012927\|Ga0137416_10860207	Not Available	804	Open in IMG/M
3300014164\|Ga0181532_10041161	All Organisms → cellular organisms → Bacteria → Proteobacteria	3116	Open in IMG/M
3300014164\|Ga0181532_10521327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	650	Open in IMG/M
3300014200\|Ga0181526_10297639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	1028	Open in IMG/M
3300014201\|Ga0181537_10001804	All Organisms → cellular organisms → Bacteria → Proteobacteria	19352	Open in IMG/M
3300014489\|Ga0182018_10528672	All Organisms → cellular organisms → Bacteria → Proteobacteria	622	Open in IMG/M
3300014491\|Ga0182014_10107883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	1658	Open in IMG/M
3300014492\|Ga0182013_10309787	Not Available	882	Open in IMG/M
3300014495\|Ga0182015_10247400	All Organisms → cellular organisms → Bacteria → Proteobacteria	1178	Open in IMG/M
3300014495\|Ga0182015_10419778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	861	Open in IMG/M
3300014495\|Ga0182015_10906047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylotenera → unclassified Methylotenera → Methylotenera sp. G11	552	Open in IMG/M
3300014501\|Ga0182024_10079348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	4902	Open in IMG/M
3300014501\|Ga0182024_10184040	All Organisms → cellular organisms → Bacteria → Proteobacteria	2881	Open in IMG/M
3300014501\|Ga0182024_12436642	Not Available	566	Open in IMG/M
3300014657\|Ga0181522_10246462	All Organisms → cellular organisms → Bacteria → Proteobacteria	1056	Open in IMG/M
3300014838\|Ga0182030_10032907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. URHB0020	9032	Open in IMG/M
3300014838\|Ga0182030_10356482	All Organisms → cellular organisms → Bacteria → Proteobacteria	1559	Open in IMG/M
3300014838\|Ga0182030_11037103	Not Available	718	Open in IMG/M
3300014838\|Ga0182030_11690898	Not Available	514	Open in IMG/M
3300015193\|Ga0167668_1007583	All Organisms → cellular organisms → Bacteria → Proteobacteria	2445	Open in IMG/M
3300015206\|Ga0167644_1002239	All Organisms → cellular organisms → Bacteria → Proteobacteria	12436	Open in IMG/M
3300015206\|Ga0167644_1041948	All Organisms → cellular organisms → Bacteria	1719	Open in IMG/M
3300015206\|Ga0167644_1128421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	688	Open in IMG/M
3300015241\|Ga0137418_10098396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → Sphingobium phenoxybenzoativorans	2634	Open in IMG/M
3300017946\|Ga0187879_10006771	All Organisms → cellular organisms → Bacteria → Proteobacteria	7532	Open in IMG/M
3300017948\|Ga0187847_10319009	All Organisms → cellular organisms → Bacteria → Proteobacteria	850	Open in IMG/M
3300018013\|Ga0187873_1279813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylotenera → unclassified Methylotenera → Methylotenera sp. G11	614	Open in IMG/M
3300018016\|Ga0187880_1090054	All Organisms → cellular organisms → Bacteria → Proteobacteria	1532	Open in IMG/M
3300018020\|Ga0187861_10294291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylotenera → unclassified Methylotenera → Methylotenera sp. G11	697	Open in IMG/M
3300018024\|Ga0187881_10463105	All Organisms → cellular organisms → Bacteria → Proteobacteria	517	Open in IMG/M
3300018026\|Ga0187857_10227583	Not Available	863	Open in IMG/M
3300018037\|Ga0187883_10631320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylotenera → unclassified Methylotenera → Methylotenera sp. G11	557	Open in IMG/M
3300019787\|Ga0182031_1252493	Not Available	2173	Open in IMG/M
3300019999\|Ga0193718_1003072	Not Available	3547	Open in IMG/M
3300020580\|Ga0210403_10147248	All Organisms → cellular organisms → Bacteria → Acidobacteria	1925	Open in IMG/M
3300020580\|Ga0210403_10228991	Not Available	1525	Open in IMG/M
3300020580\|Ga0210403_11363161	Not Available	539	Open in IMG/M
3300020580\|Ga0210403_11387897	All Organisms → cellular organisms → Bacteria → Proteobacteria	533	Open in IMG/M
3300022557\|Ga0212123_10098231	All Organisms → cellular organisms → Bacteria → Proteobacteria	2401	Open in IMG/M
3300025463\|Ga0208193_1024479	All Organisms → cellular organisms → Bacteria	1569	Open in IMG/M
3300025500\|Ga0208686_1090001	All Organisms → cellular organisms → Bacteria → Proteobacteria	662	Open in IMG/M
3300027517\|Ga0209113_1048719	Not Available	616	Open in IMG/M
3300027562\|Ga0209735_1000007	All Organisms → cellular organisms → Bacteria → Proteobacteria	27274	Open in IMG/M
3300027565\|Ga0209219_1010443	All Organisms → cellular organisms → Bacteria	2141	Open in IMG/M
3300027591\|Ga0209733_1001535	All Organisms → cellular organisms → Bacteria	5179	Open in IMG/M
3300027660\|Ga0209736_1012010	All Organisms → cellular organisms → Bacteria → Proteobacteria	2763	Open in IMG/M
3300027660\|Ga0209736_1045133	All Organisms → cellular organisms → Bacteria → Proteobacteria	1267	Open in IMG/M
3300027698\|Ga0209446_1083929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	815	Open in IMG/M
3300027701\|Ga0209447_10002699	All Organisms → cellular organisms → Bacteria → Proteobacteria	5322	Open in IMG/M
3300027729\|Ga0209248_10030684	All Organisms → cellular organisms → Bacteria → Proteobacteria	1673	Open in IMG/M
3300027737\|Ga0209038_10042789	Not Available	1353	Open in IMG/M
3300027767\|Ga0209655_10031143	All Organisms → cellular organisms → Bacteria → Proteobacteria	1785	Open in IMG/M
3300027857\|Ga0209166_10000081	All Organisms → cellular organisms → Bacteria → Proteobacteria	132100	Open in IMG/M
3300027898\|Ga0209067_10540496	Not Available	665	Open in IMG/M
3300027902\|Ga0209048_10384940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	965	Open in IMG/M
3300027905\|Ga0209415_11042156	Not Available	539	Open in IMG/M
3300028759\|Ga0302224_10092083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	1162	Open in IMG/M
3300028775\|Ga0302231_10201581	All Organisms → cellular organisms → Bacteria → Proteobacteria	831	Open in IMG/M
3300028775\|Ga0302231_10476952	Not Available	527	Open in IMG/M
3300028795\|Ga0302227_10366296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	547	Open in IMG/M
3300029882\|Ga0311368_10050928	All Organisms → cellular organisms → Bacteria → Proteobacteria	3781	Open in IMG/M
3300029943\|Ga0311340_11619095	Not Available	502	Open in IMG/M
3300029944\|Ga0311352_11228489	Not Available	568	Open in IMG/M
3300029951\|Ga0311371_10204188	All Organisms → cellular organisms → Bacteria → Proteobacteria	2925	Open in IMG/M
3300029999\|Ga0311339_11367252	Not Available	638	Open in IMG/M
3300029999\|Ga0311339_11505378	Not Available	599	Open in IMG/M
3300030007\|Ga0311338_10566345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	1176	Open in IMG/M
3300030007\|Ga0311338_11921470	Not Available	528	Open in IMG/M
3300030580\|Ga0311355_11204168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	668	Open in IMG/M
3300030739\|Ga0302311_10573241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	764	Open in IMG/M
3300030906\|Ga0302314_11589272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	585	Open in IMG/M
3300031028\|Ga0302180_10261485	All Organisms → cellular organisms → Bacteria → Proteobacteria	905	Open in IMG/M
3300031261\|Ga0302140_10502613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium	940	Open in IMG/M
3300031708\|Ga0310686_101573200	All Organisms → cellular organisms → Bacteria → Proteobacteria	1934	Open in IMG/M
3300031730\|Ga0307516_10000075	All Organisms → cellular organisms → Bacteria → Proteobacteria	107790	Open in IMG/M
3300031823\|Ga0307478_10039654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3445	Open in IMG/M
3300032160\|Ga0311301_11348198	Not Available	896	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.11%
Host-Associated	Host-Associated	1.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.09%
Aquatic	Environmental → Aquatic	33.02%
Plants	Host-Associated → Plants	1.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	49.06%
Freshwater	Environmental → Aquatic → Freshwater	29.25%
Peat	Environmental → Terrestrial → Peat	16.04%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.89%
Sediment	Environmental → Aquatic → Sediment	1.89%
Roots	Host-Associated → Plants → Roots	0.94%
Peat Moss	Host-Associated → Plants → Peat Moss	0.94%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	28.30%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	21.70%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	18.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	16.04%
Loam	Environmental → Terrestrial → Soil → Loam	8.49%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.89%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.94%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	23.58%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	16.98%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	16.04%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.49%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.72%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.72%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.89%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.94%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	15.09%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	10.38%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.49%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	7.55%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	6.60%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.66%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.66%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	4.72%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.77%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.77%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	3.77%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	2.83%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	2.83%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.89%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.89%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.89%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.89%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.94%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.94%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.94%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001159	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300003350	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009633	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300009650	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-061	Environmental	Open in IMG/M
3300009661	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-062	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009762	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015193	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)	Environmental	Open in IMG/M
3300015206	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018020	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100	Environmental	Open in IMG/M
3300018024	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300019999	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025463	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 (SPAdes)	Environmental	Open in IMG/M
3300025500	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40 (SPAdes)	Environmental	Open in IMG/M
3300027517	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027562	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028775	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2	Environmental	Open in IMG/M
3300028795	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_1	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030739	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3	Environmental	Open in IMG/M
3300030906	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031261	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031730	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM	Host-Associated	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12650J13346_10006653	3300001159	Forest Soil	VSRKKRDSVHTPSATRNRSPPAPRAQLVAIRTEFRAAITKFKALGCEDSMVLVEFWHALDCVNGEDCGNL*
JGI12635J15846_1000259614	3300001593	Forest Soil	VSRKKRDSVHTPSATRNRSLPAPRAQLVEIRAEFRDAITKLKALGCEDSMVLVEFWHALDCVNGEDCGDL*
JGI12635J15846_103817012	3300001593	Forest Soil	VSPKKRTSVREPSATRNRSSPAPSAQLVEIRAEFRTAITKLKALGCEDSMVLVEFWHALDCVNGEDCGDL*
JGI26347J50199_10116972	3300003350	Bog Forest Soil	VSPKKRNKPSTPRNRPSPPAQLVEIRTEFRAAITKLKSLGCEDSMILVEFWHALDCVNGEDSRDF*
Ga0062385_102399022	3300004080	Bog Forest Soil	MTSKKRTRGSEPGKRSLSGHIAELNEVRAELRVAITKLKALGCEDSMILVEFWHALDCVNGEDCADG*
Ga0062384_1011653792	3300004082	Bog Forest Soil	MTSKKRTRGSEPGKRSSSGHIAELNEVRAELRVAITKLKALGCEDSMILVEFWHALDCVNGEDCAGG*
Ga0062389_1009300582	3300004092	Bog Forest Soil	MTSKKRTRGSEPGKRSSSGHIAELNEVRAELRVAITKLKALGCEDSMILVEFWHALDCVNGEDCADG*
Ga0062389_1018647231	3300004092	Bog Forest Soil	VSPKKPKERSALSKRSAPAPKAQLMEVRDELRAAITKLKALGCEDSMVLVEFWHALDCVNGER*
Ga0062386_1004536462	3300004152	Bog Forest Soil	VSPKKRNEPSAPRSRSSATPSAQLVEIRAEFRAAITKLKALGCEDSMVLVEFWHALDCVNGEDCCNRN*
Ga0070730_1000006397	3300005537	Surface Soil	VRPKKRNSIRESSATRNRSSPAQLVEIRAEFRAAITKLKALGCEDSMVLVEFWHALDCVNGEDCGDL*
Ga0080026_100214374	3300005952	Permafrost Soil	VSPKKRNEPSAPRNRSSPTPRAQLVEIRAEFRTAITKLKALGCEDSMVLVEFWHALDCVNGEDCGDL*
Ga0066790_104556252	3300005995	Soil	VSPKKRNQPSATRNRSSPPPGAQLVEIRAEFRAAITKLKALGCEDSMVLVEFWHALDCVNGEDCGDL*
Ga0075019_102327522	3300006086	Watersheds	VSPKKRDQKSSQSERSAPAPKAQLMEVRGELRAVITKLKALGCEDSMVLVEFWHALDCVNGER*
Ga0073928_100569074	3300006893	Iron-Sulfur Acid Spring	VSPKKRNEPSTPRNRPPPAPRAQLVAIRTEFRAAITKFKALGCEDSMVLVEFWHALDCVNGEDCGDL*
Ga0116129_11059211	3300009633	Peatland	VTPKKRKPVREPSATRSRSSPPPSAQLVKIRAEFQAAIARLKALGCEDSMVLVEFW
Ga0116106_10639572	3300009645	Peatland	VSPRKRTKPSPARNRPAPRARLVESRAELRAAITKLKALGCEDSMVLVEFWHALDSVNGEDRGDL*
Ga0105857_12896731	3300009650	Permafrost Soil	WSSGVSPKKRNEPSATRNRSSPAPGAQLVEIRAEFRVAITKLKALGCEDSMVLVEFWHALDCVNGEDCGDL*
Ga0105858_10262474	3300009661	Permafrost Soil	NEPSATRNRSSPPPGAQLVEIRAEFRAAVTKLKALGCEDSMVLVEFWHALDCVNGEDCGDL*
Ga0116216_104099943	3300009698	Peatlands Soil	SKKRNSVHEASVTRNRSSSARSAQLVEIRAQFRAAITRLKALGCEDSMVLVEFWHALDRVNGEDCGDL*
Ga0116227_103374771	3300009709	Host-Associated	VSPKKRDQRSSQSERAAPAPKAQLAEVRGELRTAITKLKALGCEDSMVLVEFWHALDCVNGER*
Ga0116130_10639783	3300009762	Peatland	VSPRKRTKPSPARNRPAPRARLVESRAELRAAIGKLKALGCEDSMVLVEFWHALDSVNGEDRGDL*
Ga0074045_102078851	3300010341	Bog Forest Soil	SPKKRHQRSSQSERSAPAPKAQLMEVRGELCAVITKLKALGCEDSMVLVEFWHALDCVNGER*
Ga0074045_104952452	3300010341	Bog Forest Soil	VTPKKRKPVGELSAMRSRSPPRPGPHLVEIRAEFQAAITKLKALGCEDSMILVEFWHALDCVNGEDCSDV*
Ga0136449_1000492517	3300010379	Peatlands Soil	VSPRKRTKPSPARNRPAPRARLIESRAELRAAITKLKALGCEDSMVLVEFWHALDSVNGEDRGDL*
Ga0136449_1006449483	3300010379	Peatlands Soil	VSPKKRNSVYEASVTRNRSSSARSAQLVEIRAEFRVAITRLKALGCEDSMVLVEFWHALDRVNGEDCGDL*
Ga0136449_1012989311	3300010379	Peatlands Soil	VTPKKRKPVHEPAATRSRSSPPPGPQLVEIRAEFQTAISKLKALGCEDSMVLVEFWHALDCVNGEDS*
Ga0137393_106002201	3300011271	Vadose Zone Soil	VSPGKRIEPSTLRNRRSPVPGAQLVEIRAEFRAAITKLKALGCEDSMVLVEFWHALDCVNSEDCDDL*
Ga0137397_106948901	3300012685	Vadose Zone Soil	LTTKKRKSVRQKSATRSRSTPAPSPQLVEIRGAFQAAIGQLKALGCEDSMILVEFWHALDCVNGEDFSDV*
Ga0137416_108602071	3300012927	Vadose Zone Soil	GFEHDLRSCQWSRAVSPGKRIEPSTLRNRRSPVPGAQLVEIRAEFRAAITKIKALGCEDSMVLVEFWYALDCVNSEDGVDL*
Ga0181532_100411617	3300014164	Bog	VSPKKRDQRSSQSERSAPAPKAQLMEVRGELRAVITKLKALGCEDSMVLVEFWHALDCVNGER*
Ga0181532_105213271	3300014164	Bog	MRKAAPDRLWWRSDRKRGAVSPKKHNQRSSQSERSAPALKAQIIEVRGELRAVITKLKAMGCEDSMVLVEFWHALDCVNGER*
Ga0181531_110892111	3300014169	Bog	NRSSPPPSAQLVEIRTEFRAAITKFKALGCEDSMVLVEFWHALDCVNGEDCGDL*
Ga0181526_102976392	3300014200	Bog	VSPKKRDQRSSQSERSAPALKAQIIEVRGELRAVITKLKAMGCEDSMVLVEFWHALDCVNGER*
Ga0181537_100018046	3300014201	Bog	MTSKKRTRRSEPGKRSSSGHIAELNEVRAELRVAITKLKALGCEDSMILVEFWHALDCVNGEDCADG*
Ga0182018_105286722	3300014489	Palsa	VSPKKRNEPSAPRNRSSPPPGAQLVEIRAEFRAAITKLKALGCEDSMVLVEFWHALDCVNGEDCGDL*
Ga0182014_101078832	3300014491	Bog	VSPKKRNQPSATRNRSSPPPSAQLVEIRAEFRAAITKLKALGCEDSMVLVEFWHALDCVNGEDCGNL*
Ga0182013_103097873	3300014492	Bog	VSPKKRNQPSATRNRSSPPPSAQLVEIRAEFRAAITKLKALGCEDSMVLVEFWHALDCVNGEDCGDL*
Ga0182015_102474002	3300014495	Palsa	VSPKKRKEPSAPRNRSSPAPRAQLVEIRAEFRAAITKLKALGCEDSMVLVEFWHALDCVN
Ga0182015_104197783	3300014495	Palsa	VSPKKRNEPSAPRNRSSPPPGAQLVEVRAEFRAAITKLKALGCEDSMVLVEFWHALDCVNGEDCGDL*
Ga0182015_109060472	3300014495	Palsa	VSPKKRNQPSATRNRSSPPPSAQLVEIRAEFRAAITKLKALGCEDSMVLVEFWHALDCVNGEDC
Ga0182024_100793485	3300014501	Permafrost	VSPKKRNSVHEPSATRNRSSPPPRAQLDGIRAEFRAAIAKLKALGCEDSMVLVEFWHALDRVNGEDCGDL*
Ga0182024_101840402	3300014501	Permafrost	VSPKKPKERSALSKRSAAVPKAQLMEVRGELRAAITKLKALGCEDSMVLVEFWHALDCVNGER*
Ga0182024_124366421	3300014501	Permafrost	VSPKKRNEPSAPRNRPAPAPRAQLVEIRAEFRAAITKLKGLGCEDSMVLVEFWHALDCVNGEDRGDL*
Ga0181522_102464622	3300014657	Bog	VSPKKRNQPSAPRNRASSEPDAQLVEIRAEFRAAITRLKALGCEDSMVLVEFWHALDCVNGEDCGDL*
Ga0182030_100329077	3300014838	Bog	VSPKKPKERSALSKRSAPAPKAQLMEVRGELRAAITKLKALGCEDSMVLVEFWHALDCVNGER*
Ga0182030_103564824	3300014838	Bog	VSPKKRNEPAATRNRSSPPPGAQLVEIRAEFRAAITKLKALGCQDSMVLVEFWHALDCVNGEDCGDL*
Ga0182030_110371031	3300014838	Bog	VSPKKRNKPSAPRKRPPPAPRAQLVEIRAEFRAAITKLKALGCEDSMVLVEFWHALDCVNGEDCGDL
Ga0182030_116908982	3300014838	Bog	VSPKKRNHPSAPRNRSSPPPRAQLVEIRAEFRAAITKLKALGCEDSMVLVEFWHALDCANGED
Ga0167668_10075833	3300015193	Glacier Forefield Soil	LTPKKRKSVRESSVTRSRSTPAPSRQLVEIRGAFQAAIGQLKALGCEDSMILVEFWHALDCVNGEDFSDV*
Ga0167644_10022394	3300015206	Glacier Forefield Soil	VSPKKRNSVHKPSATRNRSPPPRAQLDGIRAEFRAAIAKLKALGCEDSMVLVEFWHALDCVNGEDCGDL*
Ga0167644_10419483	3300015206	Glacier Forefield Soil	VSPKKRNSLHEPSATRNRSSPAPSAQLFAIRAEFRAAITKLKALGCEDSMVLVEFWHALDCVNGEDCGDL*
Ga0167644_11284212	3300015206	Glacier Forefield Soil	VSPKKRNRPSTRRNRPSPPAQLVDIRTEFRAAITKLKALGCEDSMILVEFWHALDCVNGEDCRDF*
Ga0137418_100983964	3300015241	Vadose Zone Soil	VRQPSATRSRSTPAPSPQLVEIRGAFQVAIGQLKALGCEDSMILVEFWHALDCVNGEDCSDV*
Ga0187879_100067719	3300017946	Peatland	VSPRKRTKPSPARNRPAPRARLVESRAELRAAITKLKVLGCEDSMVLVEFWHALDSVNGEDRGDL
Ga0187847_103190092	3300017948	Peatland	VSPKKRNQPSATRNRSSPPPSAQLVEIRAEFRAAITKLKALGCEDSMVLVEFWHALDCVNGEDCGDL
Ga0187873_12798131	3300018013	Peatland	VSPRKRTKPSPARNRPAPRARLVESRAELRAAITKLKALGCEDSMVLVEFWHALDSVNGEDRGDL
Ga0187880_10900543	3300018016	Peatland	VSRKKRDSVHTPSATRNRSPPAPRAQLVAIRTEFRAAITKLKALGCEDSMVLVEFWHALDCVNGDDCGDR
Ga0187861_102942911	3300018020	Peatland	VSPRKRTKPSPARNRPAPRARLVESRAELRAAITKLQALGCEDSMVLVEFWHALDSVNGEDRGDL
Ga0187881_104631051	3300018024	Peatland	VSPRKRTKPSPARNRPAPRARLVESRAELRAAIGKLKALGCEDSMVLVEFWHALD
Ga0187857_102275832	3300018026	Peatland	VSPRKRTKPSPARNRPAPRARLVESRAELRAAIGKLKALGCEDSMVLVEFWHALDSVNGEDRGDL
Ga0187883_106313201	3300018037	Peatland	VSRKKRDSVHTPSATRNRSPPAPRAQLVAIRTEFRAAITKFKALGCEDSMVLVEFWHALD
Ga0182031_12524934	3300019787	Bog	VSPKKRNEPSATRNRSSPPPGAQLVEIRAEFRAAITKLKALGCEDSMVLVEFWHALDCVNGEDCGDL
Ga0193718_10030723	3300019999	Soil	VSRKKRNSVHEPSAMRNRSSPPPGAQLVEIRAEFRAAIAKLKALGCEDSMVLVEFWHALDCVNSEDFGDF
Ga0210403_101472481	3300020580	Soil	NRSCALTPKKRKSVRQPSATRSRSTPAPSPQLVEIRGAFQAAIGQLKALGCEDSMILVEFWHALDCVNGKDFSDV
Ga0210403_102289913	3300020580	Soil	MRAREACSLDDTKSRCLRRSCALTPKKRKSVRRPAVTLSRSTPSSQLVEIRGNFQATIAKLKALGCEDSMILVEFWHALDSVNGEDFGDV
Ga0210403_113631611	3300020580	Soil	KSSQSERSAPAPKAQLMEVRGELRAVITKLKALGCEDSMVLVEFWHALDCVNGER
Ga0210403_113878971	3300020580	Soil	FQTSRAVSPKKRTDGSALSKRSTPAPSAQLKEVRGELRAVITKLKALGCEDSMVLVEFWHALDCVNGEDCAEG
Ga0212123_100982314	3300022557	Iron-Sulfur Acid Spring	VSPKKRNEPSTPRNRPPPAPRAQLVAIRTEFRAAITKFKALGCEDSMVLVEFWHALDCVNGEDCGDL
Ga0208193_10244794	3300025463	Peatland	RAVTPKKRKPVREPSATRSRSSPPPSAQLVKIRAEFQAAIAKLKALGCEDSMILVEFWHALDCVNGEDCSDV
Ga0208686_10900011	3300025500	Peatland	VSPRKRTKPSPARNRPAPRARLVESRAELRAAITKLKALGCEDSMVLVEFWHALDS
Ga0209113_10487191	3300027517	Forest Soil	RAVSPKKRNEGPAPSKRSTPAASAHLNEVRGELRAAITKLKTMGCEDSMVLVEFWHALDCVNGEDCTEG
Ga0209735_100000715	3300027562	Forest Soil	VSRKKRDSVHTPSATRNRSPPAPRAQLVAIRTEFRAAITKFKALGCEDSMVLVEFWHALDCVNGEDCGNL
Ga0209219_10104435	3300027565	Forest Soil	SRKKRDSVHTPSATRNRSLPAPRAQLVEIRAEFRDAITKLKALGCEDSMVLVEFWHALDCVNGEDCGDL
Ga0209733_10015354	3300027591	Forest Soil	VSRKKRDSVHTPSATRNRSLPAPRAQLVEIRAEFRDAITKLKALGCEDSMVLVEFWHALDCVNGEDCGDL
Ga0209736_10120102	3300027660	Forest Soil	VSPKKRNEPAATRNRSSPPPGAQLVEIRAEFRAAITKLKALGCEDSMVLVEFWHALDCVNGEDCGDL
Ga0209736_10451331	3300027660	Forest Soil	VSRKKRDSVHTPSATRNRSLPAPRAQLVEIRAEFRDAITKLKALGCEDSMVLVEFWHALDCVNG
Ga0209446_10839292	3300027698	Bog Forest Soil	VSPKKRNEPSAPRSRSSATPSAQLVEIRAEFRAAITKLKALGCEDSMVLVEFWHALDCVNGEDCCNRN
Ga0209447_100026995	3300027701	Bog Forest Soil	VSPKKRNEPSAPRSRSSATPSAQLVEIRAEFRAAITKLKALGCEDSMVLVEFWHALDCVNGEDSRDF
Ga0209248_100306843	3300027729	Bog Forest Soil	VSPKKRNEPSAPRSRSSATPSAQLVEIRAEFRAAIAKLKTLGCEDSMVLVEFWHALDCVNGEDCVDR
Ga0209038_100427892	3300027737	Bog Forest Soil	VSPKKRNKPSTPRNRPSPPAQLVEIRTEFRAAITKLKSLGCEDSMILVEFWHALDCVNGEDSRDF
Ga0209655_100311432	3300027767	Bog Forest Soil	VSPKKRNEPSAPRSRSSATPSAQLVEIRAEFRAAIAKLKALGCEDSMVLVEFWHALDCVNGEDCGDL
Ga0209166_10000081119	3300027857	Surface Soil	VRPKKRNSIRESSATRNRSSPAQLVEIRAEFRAAITKLKALGCEDSMVLVEFWHALDCVNGEDCGDL
Ga0209067_105404962	3300027898	Watersheds	CGKRKAAADRLWWRSSGRTRGAVSPKKRDQKSSQSERSAPAPQAQLMEVRGELRAVITKLKALGCEDSMVLVEFWHALDCVNGER
Ga0209048_103849403	3300027902	Freshwater Lake Sediment	VSRKKRDSVHTPSATRNRSPPAPRAQLVAIRTEFRAAITKFKALGCEDSMVLVEFWHALDCVNGEDCGDL
Ga0209415_110421561	3300027905	Peatlands Soil	VSPRKRTKPSPARNRPAPRARLIESRAELRAAITKLKALGCEDSMVLVEFWHALDSVNGEDRGDL
Ga0302224_100920831	3300028759	Palsa	AVSPKKPKERSALSKRSAPAPKAQLMEVRGELRAAITKLKALGCEDSMVLVEFWHALDCVNGER
Ga0302231_102015812	3300028775	Palsa	LRAPSATPNRTSPRPPAHLAEIRAEFRAAIGKLKALGCEDSMILVEFWHALDCVNGED
Ga0302231_104769521	3300028775	Palsa	SALSKRSAPAPKAQLMEVRGELRAAITKLKALGCEDSMVLVEFWHALDCVNGER
Ga0302227_103662962	3300028795	Palsa	MRRAAADRLWWRSSGRTRGTVSPKKRDQRSSQSERSAPAPKAQLMEVRGELRAVITKLKALGCEDSMVLVEFWH
Ga0311368_100509284	3300029882	Palsa	VSPRKRKALRAPSATPNRTSPRPPAHLAEIRAEFRAAIGKLKALGCEDSMILVEFWHALDCVNGED
Ga0311340_116190952	3300029943	Palsa	VSPKKRNQRSSQSGRSTPAPKAQLIQVRGELRAAITKLKALGCEDSMVLVEFWHALDCVNGER
Ga0311352_112284892	3300029944	Palsa	LRACRTSSAVSPKKPKERSALSKRSAPAPKAQLMEVRGELRAAITKLKALGCEDSMVLVEFWHALDCVNGER
Ga0311371_102041884	3300029951	Palsa	VSSRKRKKVRLPLATRNRSSCAPRVQVTEVRNELRRSIGKLKALGCEDSMILVEFWHALDWVNGKY
Ga0311339_113672522	3300029999	Palsa	VSPKKRNEPSAPRNRPAPAPRAQLVEIRAEFRAAITKLKALGCEDSMVLVEFWHALDC
Ga0311339_115053781	3300029999	Palsa	GRTRGTVSPKKRDQRSSQSERSAPAPKAQLMEVRGELRAVITKLKALGCEDSMVLVEFWHALDCVNGER
Ga0311338_105663452	3300030007	Palsa	VSPKKRNEPSAPRNRPAPAPRAQLVEIRAEFRAAITKLKGLGCEDSMVLVEFWHALDCVNGEDCDDL
Ga0311338_119214701	3300030007	Palsa	MRRAAADRLWWRSSGRTRGTVSPKKRDQRSSQSERSAPSPKAQLMEVRGELRAVITKLKALGCEDSMVLVEFWHALDCVNGER
Ga0311355_112041681	3300030580	Palsa	VSPKKRDQRSSQSERSAPAPKAQLMEVRGELRAVITKLKALGCEDSMVLVEFWHALDCVNGER
Ga0302311_105732413	3300030739	Palsa	RNEPSAPRNRPAPAPRAQLVEIRAEFRAAITKLKGLGCEDSMVLVEFWHALDCVNGEDCDDL
Ga0302314_115892722	3300030906	Palsa	VSPKKRNSVHEPSATRNRSSPLPGAQLVEIRAEFRAAITKLKALGCEDSMVLVEFWHALDCVNGEDWGNL
Ga0302180_102614852	3300031028	Palsa	VSPKKPKERSALSKRSAPAPKAQLMEVRGELRAAITKLKALGCEDSMVL
Ga0302140_105026134	3300031261	Bog	TRNRSSPPPGAQLVEIRAEFRAAITKLKALGCEDSMVLVEFWHALDCVNGEDCGDL
Ga0310686_1015732003	3300031708	Soil	VSPKKRNEPSAPRTRPPPRAQLVEIRTEFRAAITKLKALGCEDSMVLVEFWHALDCVNGEECGDL
Ga0307516_1000007522	3300031730	Ectomycorrhiza	LTPKNRKSATRSRSTPAAGPQLVEIRGDLQSAIAKFKALGCEDTMILVEFWHALDSVNGEDFNDV
Ga0307478_100396543	3300031823	Hardwood Forest Soil	VSPKKRNEGPAPSKRSTPAASAQLNEVRGELRAAITKLKALGCEDSMVLVEFWHALDCVNGEDCAEG
Ga0311301_113481982	3300032160	Peatlands Soil	VSPKKRNSVYEASVTRNRSSSARSAQLVEIRAEFRAAITRLKALGCEDSMVLVEFWHALDRVNGEDCGDL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F093393

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences