Scaffold Ga0307469_10182333

Overview

Basic Information

• Taxon OID: 3300031720
• Scaffold ID: Ga0307469_10182333
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1616
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001831	Metagenome / Metatranscriptome	628	Y
F036134	Metagenome	170	Y
F063457	Metagenome	129	Y
F089991	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307469_101823331	F036134	GGCGG	MAAARLWRVVVPHSLEWRETFLRLAAETEEGRSLAPTFHGNLLSFSSSAHDRSTHRLVKDLMVQTNFSVEHQGCGAMKTYVGDTRISMTCSCGAEIVRRLSS
Ga0307469_101823332	F089991	N/A	MAKSPPEKKAPPEVRVLPMDLKLGDRLADERSEWQVIGRPYTTAGGKTAHVRVESVNQPGVTEIRSWGAHERVGVKRDEGKG
Ga0307469_101823333	F063457	GGAG	VLVSYRLRTTGQIRGFAIALPANADPHLVPTSAVIKCLADQAGVAPEEIELLDLWAER
Ga0307469_101823334	F001831	GAG	VTLKAVVVLSCSLSLFLGACAIANTPQQDLAYARWAQCNSTAGHLERIDLDGRITFRFTSPGGRQEIQQCLADAGRNGPSLPEPVGIGLPGGP