Scaffold Ga0307469_10000354

Overview

Basic Information

• Taxon OID: 3300031720
• Scaffold ID: Ga0307469_10000354
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17174
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030030	Metagenome / Metatranscriptome	186	Y
F042845	Metagenome / Metatranscriptome	157	Y
F046962	Metagenome / Metatranscriptome	150	Y
F061700	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307469_100003542	F061700	N/A	MCDKCHRFFVISYEKNEKGEVVEIGHELDIRVKSSGVVRVDEGEQHRGFERTPPARKYEEETCW
Ga0307469_100003545	F030030	AGGAG	LAKFIMSIGDNAYDILSNEARNRDVTVQQLLRAVVVPDWIKQNANGEPPIETTPHPIRSSVYGVDTSNSRMLVSPVARLRR
Ga0307469_100003546	F042845	AGGAG	METRKWKAFLRMNGETTVDSSPDILIEFKAMVEYLKSIGVGYSIVVQVEADQPEREPSQTLAMERNLPVDPELDS
Ga0307469_100003547	F046962	GGA	MEEVANSGYPPETTNRTIPQDTMTDDQLRNLLAELISSSASLNVRVWLDGVYTDIENAGAHREWMKGREVYFKVEGKVDGQNSLEETSHRSD