NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307469_10000003

Scaffold Ga0307469_10000003


Overview

Basic Information
Taxon OID3300031720 Open in IMG/M
Scaffold IDGa0307469_10000003 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)313784
Total Scaffold Genes328 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)229 (69.82%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001984Metagenome / Metatranscriptome608Y
F007146Metagenome / Metatranscriptome357Y
F012904Metagenome / Metatranscriptome276Y
F013180Metagenome / Metatranscriptome273Y
F013459Metagenome / Metatranscriptome271Y

Sequences

Protein IDFamilyRBSSequence
Ga0307469_10000003174F013180AGGAMKIPRLSVTPVVLSFLVAVLSGLVWWAGTPARAAFAPTVALIPVSGTVSGQPESVRFSGQARVSSELVLDTTRFRPPHLPAVILIIDLSGVSGTGSSTGARYTAGGDGTPVLRQLAGTDTVEITFPFSRGTSMGMSSVRTGVASFALSFDTNTGAITKGTATVAAPSFPN
Ga0307469_10000003228F001984GGAMTIRRSCLLAAALALWLCGCAIFTETYGIQEVDNWVTKNEPLAESGKMKWSEYYSQYLEKVSATPVIGQGPVVERLGIMVTASVFYERGRIDKAGFESVQGIVRKYQTIDDPAANLLARNALVRALDESPSSKPDR
Ga0307469_10000003290F013459GAGMPNGALRFILIGAGLGLAIPLVFRLASAALDLFPDAPAGLLTAFDYLQLMLWPTPLLLVPIEEPGAPDLSSWGSFAIATLANVTVYAALAGLVWMGRAKSRWILALPVLLVAGTWYLIWR
Ga0307469_10000003311F007146GGAGVNAIVKWMGIIFAIGIALMYIEYRYAQKKKEGFTPTDRMRIRGIFWITIFFCALVGWVMWVAD
Ga0307469_100000038F012904AGCAGMMPAREQQRNNRRTAWVLASIALAFFAAIMLKYVMLK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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