NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306917_10782688

Scaffold Ga0306917_10782688


Overview

Basic Information
Taxon OID3300031719 Open in IMG/M
Scaffold IDGa0306917_10782688 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)748
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000295Metagenome / Metatranscriptome1349Y
F087683Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0306917_107826881F000295N/AAKTPATATKAAAPARPRGRRRTTAGKPAGGKRSTPTLGDQVLALATGKTQQEIAAACKGARPNHVGVVIARHKRAGRIEERDGKLYATLSARTEQRAAV
Ga0306917_107826882F087683GGCGGMCGTAEIWKDAAPTRLVDVAVFCDRDDTHTASISYFAYVRLERR

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