Metagenome / Metatranscriptome Family F087683

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087683
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	42 residues
Representative Sequence	VYAEIWKDAAPAHLVDVAVFCDSDDTHTASISYFAYVRLERR
Number of Associated Samples	83
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.64 %
% of genes near scaffold ends (potentially truncated)	96.36 %
% of genes from short scaffolds (< 2000 bps)	92.73 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (66.364 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (40.000 % of family members)
Environment Ontology (ENVO)	Unclassified (40.909 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.727 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.57% β-sheet: 0.00% Coil/Unstructured: 71.43%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.20
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.20
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00313	CSD	16.36
PF01738	DLH	10.00
PF07690	MFS_1	3.64
PF07883	Cupin_2	2.73
PF00903	Glyoxalase	1.82
PF09107	SelB-wing_3	1.82
PF00248	Aldo_ket_red	1.82
PF09360	zf-CDGSH	1.82
PF01263	Aldose_epim	0.91
PF10979	DUF2786	0.91
PF01425	Amidase	0.91
PF08530	PepX_C	0.91
PF01266	DAO	0.91
PF12697	Abhydrolase_6	0.91
PF02518	HATPase_c	0.91
PF06689	zf-C4_ClpX	0.91
PF08592	Anthrone_oxy	0.91
PF02798	GST_N	0.91
PF04391	DUF533	0.91
PF11249	DUF3047	0.91
PF07080	DUF1348	0.91
PF14099	Polysacc_lyase	0.91
PF00488	MutS_V	0.91
PF13847	Methyltransf_31	0.91
PF00873	ACR_tran	0.91
PF00106	adh_short	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.91
COG0249	DNA mismatch repair ATPase MutS	Replication, recombination and repair [L]	0.91
COG0676	D-hexose-6-phosphate mutarotase	Carbohydrate transport and metabolism [G]	0.91
COG1193	dsDNA-specific endonuclease/ATPase MutS2	Replication, recombination and repair [L]	0.91
COG2017	Galactose mutarotase or related enzyme	Carbohydrate transport and metabolism [G]	0.91
COG2936	Predicted acyl esterase	General function prediction only [R]	0.91
COG2979	Uncharacterized membrane protein YebE, DUF533 family	Function unknown [S]	0.91
COG3558	Uncharacterized conserved protein, nuclear transport factor 2 (NTF2) superfamily	Function unknown [S]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.36 %
Unclassified	root	N/A	33.64 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.36 %
Unclassified	root	N/A	33.64 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.36 %
Unclassified	root	N/A	33.64 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	49.09 %
Unclassified	root	N/A	33.64 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.82 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.91 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	44.55 %
Unclassified	root	N/A	33.64 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.91 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.64 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	17.27 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.55 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.64 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	17.27 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.91 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.91 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.91 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.64 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	17.27 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.91 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.91 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.91 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.91 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.64 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	17.27 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.91 %
Methylobacterium isbiliense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium isbiliense	0.91 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.91 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.91 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.64 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	17.27 %
Bradyrhizobium sp. S69	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. S69	0.91 %
Methylobacterium isbiliense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium isbiliense	0.91 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.91 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.91 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004092\|Ga0062389_100757252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1148	Open in IMG/M
3300005332\|Ga0066388_104988395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	674	Open in IMG/M
3300005764\|Ga0066903_101845034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1156	Open in IMG/M
3300005764\|Ga0066903_108335191	Not Available	530	Open in IMG/M
3300006031\|Ga0066651_10386253	Not Available	748	Open in IMG/M
3300006032\|Ga0066696_10067661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2060	Open in IMG/M
3300006050\|Ga0075028_100947739	Not Available	533	Open in IMG/M
3300006172\|Ga0075018_10756589	Not Available	530	Open in IMG/M
3300006173\|Ga0070716_101533339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	546	Open in IMG/M
3300006176\|Ga0070765_101341316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	674	Open in IMG/M
3300006797\|Ga0066659_10470334	Not Available	1003	Open in IMG/M
3300006797\|Ga0066659_11082842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	670	Open in IMG/M
3300006806\|Ga0079220_11017788	All Organisms → cellular organisms → Bacteria → Proteobacteria	660	Open in IMG/M
3300006954\|Ga0079219_10591549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	809	Open in IMG/M
3300010048\|Ga0126373_10757810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1031	Open in IMG/M
3300010048\|Ga0126373_12541996	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	571	Open in IMG/M
3300010359\|Ga0126376_12534222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	561	Open in IMG/M
3300010366\|Ga0126379_10405968	Not Available	1411	Open in IMG/M
3300010366\|Ga0126379_13499017	Not Available	526	Open in IMG/M
3300010376\|Ga0126381_100773081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. S69	1377	Open in IMG/M
3300010376\|Ga0126381_102900457	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300010376\|Ga0126381_102980464	Not Available	673	Open in IMG/M
3300010376\|Ga0126381_104004495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	573	Open in IMG/M
3300010376\|Ga0126381_104253402	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300012205\|Ga0137362_10886231	Not Available	763	Open in IMG/M
3300012361\|Ga0137360_10101879	All Organisms → cellular organisms → Bacteria → Proteobacteria	2198	Open in IMG/M
3300012582\|Ga0137358_10490746	Not Available	828	Open in IMG/M
3300012582\|Ga0137358_10646043	Not Available	708	Open in IMG/M
3300012984\|Ga0164309_11854044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	517	Open in IMG/M
3300012989\|Ga0164305_10507397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	950	Open in IMG/M
3300015242\|Ga0137412_10208611	All Organisms → cellular organisms → Bacteria → Proteobacteria	1558	Open in IMG/M
3300016294\|Ga0182041_12254534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300016319\|Ga0182033_10910026	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300016319\|Ga0182033_11618226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	586	Open in IMG/M
3300016319\|Ga0182033_11971409	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	532	Open in IMG/M
3300016341\|Ga0182035_11107277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	705	Open in IMG/M
3300016404\|Ga0182037_10964830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	741	Open in IMG/M
3300016404\|Ga0182037_11028856	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300016422\|Ga0182039_10027313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3615	Open in IMG/M
3300016422\|Ga0182039_10505966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1044	Open in IMG/M
3300016422\|Ga0182039_11797337	Not Available	562	Open in IMG/M
3300017943\|Ga0187819_10128357	Not Available	1512	Open in IMG/M
3300020580\|Ga0210403_10249827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1455	Open in IMG/M
3300020581\|Ga0210399_10938658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	700	Open in IMG/M
3300020582\|Ga0210395_11112191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	583	Open in IMG/M
3300021170\|Ga0210400_10200187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1623	Open in IMG/M
3300021170\|Ga0210400_11021460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	671	Open in IMG/M
3300021171\|Ga0210405_10703104	Not Available	781	Open in IMG/M
3300021171\|Ga0210405_11067520	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300021178\|Ga0210408_10352989	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1172	Open in IMG/M
3300021180\|Ga0210396_10043032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4153	Open in IMG/M
3300021180\|Ga0210396_11169707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	645	Open in IMG/M
3300021403\|Ga0210397_11325220	Not Available	559	Open in IMG/M
3300021404\|Ga0210389_11416313	Not Available	530	Open in IMG/M
3300021420\|Ga0210394_11291374	Not Available	624	Open in IMG/M
3300021475\|Ga0210392_11375978	Not Available	528	Open in IMG/M
3300021478\|Ga0210402_11913442	Not Available	519	Open in IMG/M
3300021479\|Ga0210410_10718389	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300021479\|Ga0210410_10926465	Not Available	759	Open in IMG/M
3300021560\|Ga0126371_11024663	Not Available	966	Open in IMG/M
3300021560\|Ga0126371_11559494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	787	Open in IMG/M
3300021560\|Ga0126371_11817704	Not Available	730	Open in IMG/M
3300022529\|Ga0242668_1012301	Not Available	1176	Open in IMG/M
3300024288\|Ga0179589_10455204	Not Available	591	Open in IMG/M
3300025916\|Ga0207663_11179151	Not Available	616	Open in IMG/M
3300027548\|Ga0209523_1030629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1077	Open in IMG/M
3300027783\|Ga0209448_10057670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1306	Open in IMG/M
3300027812\|Ga0209656_10251160	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300027824\|Ga0209040_10246380	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300029636\|Ga0222749_10523539	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300031057\|Ga0170834_109385691	All Organisms → cellular organisms → Bacteria → Proteobacteria	651	Open in IMG/M
3300031122\|Ga0170822_10597879	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300031231\|Ga0170824_113528203	Not Available	536	Open in IMG/M
3300031545\|Ga0318541_10035968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2485	Open in IMG/M
3300031545\|Ga0318541_10104586	Not Available	1523	Open in IMG/M
3300031561\|Ga0318528_10087046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1626	Open in IMG/M
3300031561\|Ga0318528_10100339	All Organisms → cellular organisms → Bacteria	1519	Open in IMG/M
3300031561\|Ga0318528_10803706	Not Available	503	Open in IMG/M
3300031572\|Ga0318515_10093786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1568	Open in IMG/M
3300031573\|Ga0310915_11073472	Not Available	560	Open in IMG/M
3300031668\|Ga0318542_10023696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2563	Open in IMG/M
3300031679\|Ga0318561_10507758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	664	Open in IMG/M
3300031719\|Ga0306917_10782688	Not Available	748	Open in IMG/M
3300031719\|Ga0306917_11433585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	532	Open in IMG/M
3300031723\|Ga0318493_10350666	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300031744\|Ga0306918_10499408	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300031778\|Ga0318498_10359270	Not Available	650	Open in IMG/M
3300031798\|Ga0318523_10257702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	872	Open in IMG/M
3300031798\|Ga0318523_10564715	Not Available	561	Open in IMG/M
3300031821\|Ga0318567_10882301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	507	Open in IMG/M
3300031823\|Ga0307478_10647443	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	885	Open in IMG/M
3300031832\|Ga0318499_10076292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1279	Open in IMG/M
3300031846\|Ga0318512_10539109	Not Available	593	Open in IMG/M
3300031860\|Ga0318495_10078745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1473	Open in IMG/M
3300031879\|Ga0306919_10980702	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300031910\|Ga0306923_11775459	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300031912\|Ga0306921_12351677	All Organisms → cellular organisms → Bacteria → Acidobacteria	557	Open in IMG/M
3300031942\|Ga0310916_11689870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	512	Open in IMG/M
3300031954\|Ga0306926_10151190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2875	Open in IMG/M
3300031981\|Ga0318531_10199787	Not Available	901	Open in IMG/M
3300032039\|Ga0318559_10124613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1157	Open in IMG/M
3300032051\|Ga0318532_10303370	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300032052\|Ga0318506_10420466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	593	Open in IMG/M
3300032059\|Ga0318533_10373755	Not Available	1039	Open in IMG/M
3300032063\|Ga0318504_10309602	Not Available	748	Open in IMG/M
3300032091\|Ga0318577_10035489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2178	Open in IMG/M
3300032261\|Ga0306920_101198113	All Organisms → cellular organisms → Bacteria → Proteobacteria	1097	Open in IMG/M
3300032261\|Ga0306920_102512225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	708	Open in IMG/M
3300032261\|Ga0306920_103329653	Not Available	598	Open in IMG/M
3300033134\|Ga0335073_12107213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium isbiliense	511	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.64%
Aquatic	Environmental → Aquatic	6.36%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.64%
Freshwater	Environmental → Aquatic → Freshwater	4.55%
Sediment	Environmental → Aquatic → Sediment	1.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.36%
Loam	Environmental → Terrestrial → Soil → Loam	6.36%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.82%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	61.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.55%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.64%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.64%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.82%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.82%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	40.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.18%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.82%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.45%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.64%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.73%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022529	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062389_1007572521	3300004092	Bog Forest Soil	EIWKDAAPAHLVDVAVFCDSDDTHTASISYFAYVRLERR*
Ga0066388_1049883952	3300005332	Tropical Forest Soil	ARVYAEIWKDAAPAHVVDVAVFCDSDDTHTARISYFAYVRLERPI*
Ga0066903_1018450341	3300005764	Tropical Forest Soil	VYAEIWKDAAPAHLVDIAVFCDADDTHTASVSYFACVRLERG*
Ga0066903_1083351911	3300005764	Tropical Forest Soil	IYAEIWKGAAPAHVVDVAVFCDSDDTHTASISYFAYVRLERR*
Ga0066651_103862532	3300006031	Soil	YAEIWKDAAPAHLVDNSVFCDSDDTHTASISYFAYVRLERR*
Ga0066696_100676614	3300006032	Soil	WKDAAPAHLVDIAGFCDSDDTHTASVSYFAYVQLEQR*
Ga0075028_1009477391	3300006050	Watersheds	RVYGEIWKDAAPAHLVDVAVFCDSDDTYATSVSYFDYVRLERR*
Ga0075018_107565892	3300006172	Watersheds	KDAAPAHLVDVAVFCDSDDTHTASISYFAYVRLERR*
Ga0070716_1015333391	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VYAEIWKDAAPAHLVDIAVFCDSDDTHTASISYFDYVRLERR*
Ga0070765_1013413161	3300006176	Soil	IDLARVYSEIWKDAAPAHLVDIAVFCDGDDTHTASVSYFDYVRLEQR*
Ga0066659_104703341	3300006797	Soil	DTAPAHLVDVAVFCDSDDTHTASISYFAYVQLERR*
Ga0066659_110828422	3300006797	Soil	YAEIRKDAAPAHLVDVAVFGDSDDTHTASISYFDYVRLERR*
Ga0079220_110177881	3300006806	Agricultural Soil	VIHLARVHGEIWKDAAPARLVDVAVFCDGDDTHTASISYFDYVRL
Ga0079219_105915491	3300006954	Agricultural Soil	RTDAAPAHLVDAAVFRDSDDTHTASISYFACVRLERR*
Ga0126373_107578101	3300010048	Tropical Forest Soil	LARIYAEIWKDAAPARVVDVAVFCDSDDTHTASISYFEYAGLERR*
Ga0126373_125419962	3300010048	Tropical Forest Soil	DLARVYPEIWRDAAPAHLVGIAVFCDTDDTHTASVSYFAYVRLKRL*
Ga0126376_125342222	3300010359	Tropical Forest Soil	YTEIWKDAAPAHVFDIAVFCDSDDTHAASISYFAYVWLERR*
Ga0126379_104059681	3300010366	Tropical Forest Soil	IWKDAAPAHLVDIAVFCDSDDTHTASISYFAFVRLERQ*
Ga0126379_134990171	3300010366	Tropical Forest Soil	RAPTIRLARVYAVIWKDPAPAHPVDIAVFCDSDDTHTASVSYFAYVRLERR*
Ga0126381_1007730811	3300010376	Tropical Forest Soil	VDLGHIYGEIWKDAAPAHLVDIAVFCDSDDTHTASVSYFDYVRLEQR*
Ga0126381_1029004571	3300010376	Tropical Forest Soil	KGAAPAHVVDVAVFCDSDDTHTASISYFAYVRLERR*
Ga0126381_1029804642	3300010376	Tropical Forest Soil	LAQIYAEIWKDAAPAHLVDVAVFCDSDDTHTASVSYVAYVRVERR*
Ga0126381_1040044952	3300010376	Tropical Forest Soil	DLARIYAEIWKDAAPAHVVDTAVFCDSDDTHTASISYFEYVRLERR*
Ga0126381_1042534021	3300010376	Tropical Forest Soil	KIDLARVYAEIWMDAAPAHLVDIAVFCDSAGTHTASISYFAYVRLERR*
Ga0137362_108862312	3300012205	Vadose Zone Soil	YAEIWKDAAPAHLVDVAVFCDSDDTHAASISYFAYVRLERR*
Ga0137360_101018794	3300012361	Vadose Zone Soil	LARVYAEIWKDAAPAHLVDVAVFCDSDDTHTTSVSYFDYVRLERR*
Ga0137358_104907462	3300012582	Vadose Zone Soil	EKIDLARVYAEIWKDAAPAHLLDVAVFCDSDDTHTVKRQLFPLVRLERR*
Ga0137358_106460432	3300012582	Vadose Zone Soil	LYAEIWKDAAPAHLVDVAVFCDSDDTHTTSVSYFDYVRLERR*
Ga0164309_118540441	3300012984	Soil	EKIDLGHIYAEIWKDAEPAHLVDIAVFCDSDDTHTSSISYFDYVRLERR*
Ga0164305_105073973	3300012989	Soil	EIWKDAAPAHLVDVAVFCDSDDTHTASVSYFDYVRLEQR*
Ga0137412_102086113	3300015242	Vadose Zone Soil	DAAPAHLVDVAVFCDSDDTHTTSVSYFDYVRLERR*
Ga0182041_122545342	3300016294	Soil	DERIDLVAICADVWKDAAPARLVDVAVFCDSGDTHTASISYFAYVRLERR
Ga0182033_109100261	3300016319	Soil	EDRAGARVYAEIWKDAAQAHLVDVAVFCDSDDTHTASISYFAYVRLERR
Ga0182033_116182262	3300016319	Soil	AEIWKDAAPAHLVDVAVFCDSDDTHTASVSYFEYVRLEQR
Ga0182033_119714091	3300016319	Soil	RVYAEIWKDAASAHLVDIAVFCDSHDTHTASISYFSYVRLERR
Ga0182035_111072772	3300016341	Soil	YAEIWKDAAPAHLVDVAVFCDSDDTYTASISYFAYVRLERR
Ga0182037_109648302	3300016404	Soil	KDAAPVHLTDIAVFCDSDDTHTASISYFEYVQVERQ
Ga0182037_110288562	3300016404	Soil	DLGRVYAEIWKDAAPAHLIDISVFCDSDDTHTASIGYFAYVRLERR
Ga0182039_100273131	3300016422	Soil	DAAPAHLVDVAVFCDSDDTHTASISYFAYVRLERR
Ga0182039_105059661	3300016422	Soil	IDLARVYGEIWKDAAPTHLIDVAVFCDSDDTHTASISYFGYVRLERR
Ga0182039_117973371	3300016422	Soil	DDRVRRWLDERIDLAHVCAEIWKDAAPAHLVDVAVFCGSDDTHTASISYFAYVRLERW
Ga0187819_101283572	3300017943	Freshwater Sediment	LARVYAEIWQDAAPAHLVDVAVFCDSDDTHTASISYFAYVRLERR
Ga0210403_102498271	3300020580	Soil	RVYGEIWKDAAPAHLVDVAVFCDSDDTHTANIRYFAYIRLEQ
Ga0210399_109386582	3300020581	Soil	ARVYGEIWKDAAPAHLVNVAVFCDSDDTHTANIRYFAYIRLEQ
Ga0210395_111121911	3300020582	Soil	EIWKDAAPAHLVDIAVFCDSDDTHTASISYFDCVRLERR
Ga0210400_102001871	3300021170	Soil	DHIYAEIWKDATPAHLVDVAVFCDSDDTHTASISYFDYVRLERR
Ga0210400_110214601	3300021170	Soil	KDVAPAHLIDIAVFCDSDDTHTASISYFDYVRLERW
Ga0210405_107031043	3300021171	Soil	RVYAEIWKDAAPAYLVDIAVFCDSDDTHTASISYFAYARLERR
Ga0210405_110675201	3300021171	Soil	EIWKDGAPAHLADVAVFCDSDDTHTASISYFAYVRLERR
Ga0210408_103529891	3300021178	Soil	DATPSHLVDIAVFCDSDDTHTASISYFAYVRGGRS
Ga0210396_100430321	3300021180	Soil	GEIWKDAAPAHLVDVAVFCDGDDTHTASISYVAYVRLERR
Ga0210396_111697072	3300021180	Soil	YGEIWKDAAPAHLVDVAVFCDSDDTHTATISYFAYVRLERR
Ga0210397_113252202	3300021403	Soil	GEIWKDAAPAHLVDVAVFCDSDDTHTASISYFDYVRLERR
Ga0210389_114163131	3300021404	Soil	WKDAAPAHLVDVAVFCDSDDTHTASISYFDYVRLERR
Ga0210394_112913741	3300021420	Soil	IYAEIWKDVAPAHLIDIAVFCDSDDTHTASISYFDYVRLERR
Ga0210392_113759781	3300021475	Soil	EIWKDAAPAHLVDVAVFCDSDDTHTASISYFDYVRLERR
Ga0210402_119134421	3300021478	Soil	DLARVYATIWKDAAPAHLVDVAVFCDSDDTHTAGVSYFAYVRLERR
Ga0210410_107183893	3300021479	Soil	EIWKDAAPAHLVDIAVFCDSDDTHTASISYFAYVRLERR
Ga0210410_109264651	3300021479	Soil	DLARVYGEIWKDAAPAHLVDIAVFCDSDDTHTASISYLAYVRFERR
Ga0126371_110246631	3300021560	Tropical Forest Soil	EIWKDAAPAHLVDVAVFCDSDDTHTASISYFAYVRLEWPI
Ga0126371_115594942	3300021560	Tropical Forest Soil	YAEIWKDAAPAHVFDIAVFCDSDDTHAASISYFAYVWLERR
Ga0126371_118177042	3300021560	Tropical Forest Soil	WKDAAPAHLVDIAVFCDSDDTHTASISYFEYVRLERR
Ga0242668_10123011	3300022529	Soil	EKIDLARVYGEIWKDAAPAHLINVAVFCDSDDTHTASISYFDYVRLERR
Ga0179589_104552042	3300024288	Vadose Zone Soil	IDLGRVYGEIWKDTAPAQLVDVAVFCDSDDTHTASISYFVYVRLERR
Ga0207663_111791512	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	DLARVYGEIWKDTATAHLVDVAVFCDSDDTHTASISYFAYVRLERR
Ga0209523_10306292	3300027548	Forest Soil	VYAEIWKDAAPAHLVDVAVFCDSDDTHTASISYFAYVRLERR
Ga0209448_100576701	3300027783	Bog Forest Soil	AEIWKDAAPAHLVDVAVFCDSDDTHTASISYFAYVRLERR
Ga0209656_102511602	3300027812	Bog Forest Soil	LGRGVLARVYAEIWKDAAPAHLIDIAVFCDSDDTHTAGISYFAYVRLERR
Ga0209040_102463803	3300027824	Bog Forest Soil	AEIWKDAAPAHLVDIAVFCDSDDTHTASISYFAYVRLERR
Ga0222749_105235392	3300029636	Soil	DAAPAHLVDIAVFCDSDDTHTASISYFAYVRLERR
Ga0170834_1093856912	3300031057	Forest Soil	LLYLSAPAHLIDIAVFCDSDDTHTASISYFAYVRLERR
Ga0170822_105978792	3300031122	Forest Soil	MELASVYAEIWKDAAPAHLVDIAVFCDSDDTRTASVSYFDYVRLEQR
Ga0170824_1135282031	3300031231	Forest Soil	IWKDAAPAHLVDIAVFCDSDDTRTASVSYFDYVRLEQR
Ga0318541_100359684	3300031545	Soil	IWNDAAPAHLVDLAVFCDSDDTHTASISYFAYVRLERR
Ga0318541_101045861	3300031545	Soil	VYAEIWKDAAQAHLVDVAVFCDSDDTHTASISYFAYVRLERR
Ga0318528_100870463	3300031561	Soil	IWEDAAPAHLVDVAVFCDSDDTHTASISYFAYVRLERR
Ga0318528_101003394	3300031561	Soil	AVYDEIWKDAAPTHLVDVAVFCDSDDTHTASIAYFAYVQLEPRPAR
Ga0318528_108037062	3300031561	Soil	DLARVYAEIWKDAASAHLVDIAVFCDSDDTHTASISYFAYARFERR
Ga0318515_100937863	3300031572	Soil	CAGIYAKIWKDAAPAHVVDVAVFCDSDDTHTASISYFAYVRLERR
Ga0310915_110734721	3300031573	Soil	RVYAEIWKDAASAHLVDIAVFCDSDDTHTASISYFAYARFERR
Ga0318542_100236961	3300031668	Soil	WKDAAPAHLVDLAVFCDSDDTHTASISYSAYVRLERR
Ga0318561_105077581	3300031679	Soil	DLEDAAPAHLVDVAVFCESDDTHTASISYFAFVRLERR
Ga0306917_107826882	3300031719	Soil	MCGTAEIWKDAAPTRLVDVAVFCDRDDTHTASISYFAYVRLERR
Ga0306917_114335851	3300031719	Soil	IDLARVYGEIWKDAAPAHVVDIATFCDSDDTHTASVSYFAYVRLEGR
Ga0318493_103506662	3300031723	Soil	VYAEIWKDAAPAHLVDVAVFCDSDDTHTASIAYFAYVRLERR
Ga0306918_104994082	3300031744	Soil	KDAAPPHLVAVAVFCDSDDTHTASISYFAYVRLERR
Ga0318498_103592701	3300031778	Soil	VYAEIWKDATPAYLVDVAVFCDSDDTHSASISYFAYVRLEQR
Ga0318523_102577021	3300031798	Soil	KDTSPARLIDVAVFCDSDDTHTASISYFEFVRLEQR
Ga0318523_105647152	3300031798	Soil	WKDAAPAHVVDVAVFCDSDDTHTASISYFAYVRLERR
Ga0318567_108823011	3300031821	Soil	IWKDAAPAHLVDVAVFCDSDDTHTASISYFAYVRLERR
Ga0307478_106474431	3300031823	Hardwood Forest Soil	IWKDGAPAHLADVAVFCDSDDTHTASISYFAYVRLERR
Ga0318499_100762921	3300031832	Soil	CGNLKDAPSAHLVDIAVFCDSDDTHTASISYFAYARFELR
Ga0318512_105391092	3300031846	Soil	AEIWKDAAPVHLVDVAIFCDSDDTHPGSISYFAYVRLERR
Ga0318495_100787451	3300031860	Soil	LARVYAEIWKDAAPAHLVDVAVFCDSDDTYTASISYFAYVRLERR
Ga0306919_109807022	3300031879	Soil	RVYAEIWKDAASAHLVDIAVFCDSDDTHTASISYFAYARFELR
Ga0306923_117754591	3300031910	Soil	DAPSAHLVDIAVFCDSDDTHTASISYFAYARFELR
Ga0306921_123516772	3300031912	Soil	EKAVEIASLGRGVLACVYAAIRKDAAPAHLIDIAVFCDSDDTHTPGIRYFAYVRLERP
Ga0310916_116898701	3300031942	Soil	WLDEKIDLARVYAEIWKDAASAHLVDIAVFSDSHDTHTASISYFDGGEAH
Ga0306926_101511901	3300031954	Soil	VYAEVWKDAAPVHLTDIAVFCDSDDTHTASISYFEYVQVERQ
Ga0318531_101997872	3300031981	Soil	DRVYATIWKDAAPAHLVDIAVFCDSDDTHTASISYFAYVRLERR
Ga0318559_101246131	3300032039	Soil	RIDLVRVYAEIWKDAAPAHLVDVAVFCDSDDTHTASISDFAYVRLERR
Ga0318532_103033702	3300032051	Soil	LPARWQRYGRPLARREDRAGARVYAEIWKDAAQAHLVDVAVFCDSDDTHTASISYFAYVRLERR
Ga0318506_104204661	3300032052	Soil	AEIWKDAAQAHLVDVAVFCDSDDTHTASISYFAYVRLERR
Ga0318533_103737553	3300032059	Soil	KIDLARVYAEIWKDAASAHLVDIAVFCDSDDTHTASISYFAYARFERR
Ga0318504_103096023	3300032063	Soil	VYTEIWKDAAPAHLVDIAVFCDSDDTHTASISYFAYVRLERR
Ga0318577_100354894	3300032091	Soil	VYAEIWNDAAPAHLVDLAVFCDSDDTHTASISYFAYVRLERR
Ga0306920_1011981132	3300032261	Soil	LARREDRAGARVYAEIWKDAAQAHLVDVAVFCDSDDTHTASISYFAYVRLERR
Ga0306920_1025122251	3300032261	Soil	KIDLARVYAEIWKDAASAHLVDIAVFCDSHDTHTASISYFDGGEAH
Ga0306920_1033296531	3300032261	Soil	SSGAAIWKDAAPPHLVDVAVFCDSDDTHTASISYFAYVRLERR
Ga0335073_121072132	3300033134	Soil	DAAPAQLYEIAVFCDSDDTGTASVGYFADVALTRRAPTLLGR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087683

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences