Scaffold Ga0307474_10000001

Overview

Basic Information

• Taxon OID: 3300031718
• Scaffold ID: Ga0307474_10000001
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 353370
• Total Scaffold Genes: 321
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 238 (74.14%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000036	Metagenome / Metatranscriptome	4352	Y
F001220	Metagenome / Metatranscriptome	744	Y
F005986	Metagenome / Metatranscriptome	384	Y
F007441	Metagenome / Metatranscriptome	351	Y
F010577	Metagenome / Metatranscriptome	302	Y
F012392	Metagenome / Metatranscriptome	281	Y
F013689	Metagenome / Metatranscriptome	269	Y
F014779	Metagenome / Metatranscriptome	260	Y
F033888	Metagenome / Metatranscriptome	176	Y
F038397	Metagenome / Metatranscriptome	166	Y
F044300	Metagenome / Metatranscriptome	154	Y
F050516	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307474_10000001124	F038397	AGGAG	MFRTFALIFAALILVIAPLQAGTIHEVFNQTYTGTAALSTTDLLTPPTSDRSYLITIYYSLSGTSSAGVKDSVSPYFTWTDNVGTEQLGNGLCPWNENGTPKKCSFNGTYGPWLQPLVVYGGVGGTQTNAGPLAVTFPVRVLANSHLTLTIPVSNPDNLTYQVSVQVQGW
Ga0307474_10000001151	F014779	GGA	MENLRTHECTICGDERSAGQVWFLVAESHWEDKLRVLEWQDVLARRQGIYAACSAEHVEELVVHWMTTGSLDYPFATVGHKPGKRTLGPGSLLPTIEEPDTRGARQIGELAVDRECVRRALRDDPGSLRVILDELVHALERETTGTMARLESADAMSYGFPREI
Ga0307474_10000001156	F044300	N/A	VTLLPGAVTSAWSKDWPLPVKVLSAESHQFQAPAPPKCDWRDISAYCYSSTPAIYVENTMVVQEPDGKSLEIACTVYNQWSRCASLPVHQSFPAHMTKHSMEIRYRDQHGKMRKQVYEILRKDNGKKTW
Ga0307474_10000001190	F000036	GAGG	MTTKESFWMACDSIEQLRAEYGPFQTRAEAEAEARKLGFGFLLRYEHIIDANENIQEVRCIFIELPSAHRTPTGPVVRKLHTRCATCGETAIHEEHWQAEVWADIHEFEHLRHRVRLFEQSRREGLKEIGDWRDQCA
Ga0307474_1000000125	F005986	N/A	MRFQTTIAAILLSTSVLAAAYKTETLQELMARAQSARVEDLPALCVEIAERQLKSADDLYTAGKVDDAQTALKDVVTYSEKAHDAAMQSGKKVKNTEIAFRKMAAKLRDIKRSLNFDDQASVQAAADRLESLRTDLLSHMFSKGK
Ga0307474_100000014	F010577	AGG	MQILLEAQLHQAMVTSLTTALARVTSRTWLESSVVSLQSLLLFAFQIPEQFSSKKDNVYNILWVLVFGFATLNILGLVARRFEPRRSNLNFGEMLAITVTVVSVVLLGWEMLSIFHIFPIKIHPH
Ga0307474_1000000150	F013689	GGAG	MKSAFLTVLLFVGAAQAQQNFIAASAVPDAPNPQKFWSTENKIDFTIFAGQIAADAITTQHGLNNGFREANPMMRPLVTRGVAGEAGASALGFGIGVGTAYVLHKTHHYRAERMAARTMLAVEGGFVANNLMRLY
Ga0307474_1000000170	F012392	N/A	MRPPCYLRGFLVVLGLVVLGTMLPACAAAQVDAEVSLGDLARSLRQSKNPKEAAASDVIDNDNLTQVIDDVEHFRENGKPIFSFDGAGRDFRMSSPDGTCSLSFNANAAALLSTPYVSQDLPQSELAKLDGPAYIRGDSLEVSVYNASAWSLREITVGLTIVRHPDVNAASFGTAKLLPAVAGGDLPEEKRSDQTLLLHLKGTTAPLATSVYREKLDAALDDGQEWHWAIVEAKGIPPATLADSAKY
Ga0307474_1000000176	F050516	N/A	MAAPNFVPVNFLPSVSWHGAKSLTALALLSGTMIAQVISVSGGPPNLRPVDSSTIDPAPLSPGRAGSNAVATSPVAASALPEAPSQHRFWDGQNRVLFATVAALSAADFALTRNILQNGGKELNPVTRLFSGSTAGLAANFAGETAGIIGLSYCFHKTGHHQLERITPMLDIGASSFAVVYDLSHR
Ga0307474_1000000184	F033888	AGGAG	MTEFLRKTGTSGVVLSVAEYVVMLFVTVMTGVSTLRLLGILP
Ga0307474_1000000186	F007441	AGGAG	MNRITVLSTVSMLALSFAAFAGDDAPRTFRGEISDSQCALNVHSLTKSHQEMLKSKSGAAGESPASCSHYCIEHLGGKFVLASKSHVYHLDNQDLPRGFVGKKVKVRGTLDSKTEIIHVANIEE
Ga0307474_1000000187	F001220	GAG	VNQKAMRYLGGLILVICAIACAQVPAAPVHVIEVLADKDSRYKMAGEKKPEIRVKAGEQILLRITARKGKSWNRDGSIHGFSLLRAKDRSKVAGWDLLLRPGTQEFSMTVPVEPGEYVVVCTVICSEEHEGMFMKFVVTP