Scaffold Ga0310813_11129789

Overview

Basic Information

• Taxon OID: 3300031716
• Scaffold ID: Ga0310813_11129789
• Source Dataset Name: Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 719
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 36.0
  • Long. (^o): -78.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011157	Metagenome / Metatranscriptome	294	Y
F050163	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310813_111297891	F011157	N/A	RYTFMPCNPGFQDAVVACFYEAGMGPPIAAYDFYADSGIIEQQWKKQYENCMFRRGYNQVYGTTTWKPKERFNGAAGWPWPNDPPKSAWTWVRTAGAGDRHYYDAVCEP
Ga0310813_111297892	F050163	AGGAGG	MAQPQLIQIALESGGHNALGVDQEGAVWRGRIQRATSGEEFIVWKRIRSEFQEG