Scaffold Ga0310813_10016190

Overview

Basic Information

• Taxon OID: 3300031716
• Scaffold ID: Ga0310813_10016190
• Source Dataset Name: Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4978
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 36.0
  • Long. (^o): -78.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005427	Metagenome	401	Y
F033964	Metagenome / Metatranscriptome	176	Y
F081791	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310813_1001619011	F081791	AGGAGG	MAYYKVRIEVWCDWNPAESDLDDIAQSLGVGEAVC
Ga0310813_100161903	F005427	GGAG	MHTGTEIQPSVGSLTTDIQGQIRRLAAKMQRWITSLVRKAKKAMVFDRSAHWIHDTIPPTAVLAGAAAFGFWWDSVSAALFACFALFFLAGIYKGLRQLVATLRWEHDRIIAANSNWNTSGTVERSERNFEVGAKAIEHLRPWVEDETALTEESAKAYCSVLLDTLATLHPKFTE
Ga0310813_100161905	F033964	GGAG	MNLTRFLACAAAVWLVRVALNWAFYTRVIGQQSQQIAAAHPGLFREVVPGLILTDLIFALVFTYLFVKVGAALGGGRMAGVKLGLLVAVLSPVIGGLYQYFSVTYMWIGLTMAESVFQIIAHAIEGAVAGAIYKAEVVPKIEAIRAR