Scaffold Ga0307476_10001644

Overview

Basic Information

• Taxon OID: 3300031715
• Scaffold ID: Ga0307476_10001644
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13570
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (76.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000072	Metagenome / Metatranscriptome	2651	Y
F001432	Metagenome / Metatranscriptome	696	Y
F051804	Metagenome / Metatranscriptome	143	Y
F069867	Metagenome	123	Y
F094511	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307476_100016441	F094511	N/A	LKDNEEIRPLSANRNTVKALERRGLISPGKGRDALTIAWRLKKK
Ga0307476_1000164419	F001432	GGAGG	MLNKHYIRDGNRKIIGSVTTGFSDESGVVRREDNQIAGRTNDRFSTTRDAHGKLVSINSSDPGLLINQKK
Ga0307476_100016443	F000072	GAG	MDVERIIDDIEQLQEMFEAPDIRPLSASDISAANRRHDETLAHSPWFRLWQRYGVCCRTESPVLRLGESES
Ga0307476_100016445	F051804	N/A	VTKDKPVICTTLMVEVLGPKDASAKRIRFVEDILRNCIRTLDRDFRKSRIPQMRGFSLKPEPLRRKRKGSR
Ga0307476_100016446	F069867	GGAG	VPHTIHEYPELAGKTVSKVTVTNESDWRSITVRFTDNTAIHFSIRPFVQIEPEHVDWRTGDGKLLRIYPFVREKRG