Scaffold Ga0315291_11041250

Overview

Basic Information

• Taxon OID: 3300031707
• Scaffold ID: Ga0315291_11041250
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 684
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5895
  • Long. (^o): -110.359
  • Depth (m): 92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001538	Metagenome / Metatranscriptome	674	Y
F026856	Metagenome	196	Y
F093485	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_110412501	F026856	N/A	KHKTLCKSSDMTVIWNNLSEWAGSADSAELRHKVVIAYKDALSREKK
Ga0315291_110412502	F001538	GGAG	MIDTIKLFPTVQPSGYPDKHDLAQVKLEKQHEMNKANELAKQKQVQLQDLAFAIYTKKAAQERLRMEIFQNRKLDIYA
Ga0315291_110412503	F093485	GGA	MVTKKSPAKVAPVKRSKPKSEQTINVSMAAPVAPKSESKKDDSTLGKIIGLIEWVDNPFKLFTVILLAFLAFAGYFAWDSRQVLLHAITTQDKMPQLAKQEN