Scaffold Ga0315291_10404710

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315291_10404710

Scaffold Ga0315291_10404710

Overview

Basic Information
Taxon OID	3300031707 Open in IMG/M
Scaffold ID	Ga0315291_10404710 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1297
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5895	Long. (^o)	-110.359	Alt. (m)		Depth (m)	92
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020510	Metagenome / Metatranscriptome	223	Y
F081048	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_104047104	F081048	AGGA	MPFFCVFAVIEFMSVKRITWQIEILERAKKSLADGRVVVTRCRLDLALHIAKEMLKRAQAYQKRDLEKKK
Ga0315291_104047106	F020510	N/A	AAAEGGAVSLQDLLTMFSARVIGTYTPEQYANAVLTARADRMRWGMGQW

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