Scaffold Ga0315291_10301176

Overview

Basic Information

• Taxon OID: 3300031707
• Scaffold ID: Ga0315291_10301176
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1571
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5895
  • Long. (^o): -110.359
  • Depth (m): 92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003579	Metagenome / Metatranscriptome	478	Y
F005113	Metagenome / Metatranscriptome	411	Y
F013396	Metagenome	271	N
F074549	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_103011761	F074549	GGGGG	MILTDMLFNAASGGVVGSLLHLGTSCFETWRKRKDAEVEIMLLNAKLQAAEKEAAWTAFTASQKDTNATLVIPVGTWPWVGSIYVLVDAFRQLTRPGLTWAGFIFLTSVYFSAPIEVRATMSPEIQF
Ga0315291_103011762	F013396	N/A	VTLRRSFLLAVLALGLVALLALALRSERVLTAGLPLRIIVASEAEAWTLAGPSAVVVLGTGSMAPYIPAAPKGADPLRTVSALVVLVLGASYADIKAGSLCIYVPRWAGRNVMHQAAQIDAGGWIMTGLGNKEYENKERVTAANFVGIVSRTYVWGK
Ga0315291_103011763	F005113	GGAGG	MTKDEHKNAIVSQLQQQSLNLLVDSLAAALAEIEKLKAAAADKPTP
Ga0315291_103011764	F003579	N/A	MTTIPIAPYTIGSPAFPKVGTQFEVRYINYSAPTAVADCHLLDAEGVEIMPVGLVPATAEQCAEWTDDAAFAAVLAVNAGFELVSEE