Scaffold Ga0315291_10022488

Overview

Basic Information

• Taxon OID: 3300031707
• Scaffold ID: Ga0315291_10022488
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7492
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (29.41%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5895
  • Long. (^o): -110.359
  • Depth (m): 92

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002778	Metagenome / Metatranscriptome	530	N
F003786	Metagenome / Metatranscriptome	468	N
F009808	Metagenome	312	N
F019647	Metagenome / Metatranscriptome	228	N
F038230	Metagenome	166	N
F054865	Metagenome / Metatranscriptome	139	N
F090393	Metagenome	108	N
F099306	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315291_1002248810	F002778	AGGA	VKEYNAQMMEIKNFCDEVNAWITTSPSAEMLDLCDEYLRQLSAYYSRYTVISGINESIYSQLLMICIRDMAEEEYKRIKHSSTLTDYYVKGKYPKATAIFEQCRAVKQLLLITSDNYRTLLSSFRQERILVGHMTT
Ga0315291_1002248812	F090393	N/A	MALDRKTPFNVVFYDHEQDQINSWQFKGSARLALLVNTITSQKDKIEANNINKIEDIEKALNYMIYELKKFIETPYTTEDNV
Ga0315291_1002248813	F019647	AGAAG	MKIVKGVVKYGAGAPREGQYGPSINILVTLEDQSQVRVYGKPGDVIERYKSGQNINLIDDKGKYKVVEDDAPVQGTDAAEKPDFEQKVFEMCALYSKNYVDIYNAMVAAGIPHENATAATSTIFIQVFQKMR
Ga0315291_1002248815	F003786	N/A	MSNLTQYQPRNSDEQAIITARSNRIANMEQKDAYKQTLNVISSVFPMYGIDGDLAFFANIAKEIVKTFGQIAANEIEIAFRLFSAESLELDDDVKFYGKANMHTIGKILNGYMTYRRKIIASHDNEVAALRYQVQMEERGKAEREKLYAEFPTMIKMFNGKTFEDVPLYWYDMCLKFDMITYEEGEKRALWDEAQAIALKEPADSLDLLTIRSHAKKIEQGNMKRAVVIAQKLAVWRKVIKK
Ga0315291_1002248816	F038230	GGA	MQCKQDRNAYMKEYMKKYRATMNEYTYKKIRERENQRLRAKYRAMTVEERQKYIEYQRTYHKLKHITNE
Ga0315291_100224884	F099306	N/A	MMQEKVIRKRLNNLEKIYIAESMKHHNRQNKWFMGIIEQRIKQEKTKLTLLKIGTHGN
Ga0315291_100224886	F009808	N/A	MKKNFNNQNFEWLFQDITSSMPKIIFTGIILTYLITAALNVYFLPLPLMLSIPASLMLQFGRFAVVFIDFLNPSEKRSKYPPRVAAAATVIALLELWFSIQGQSTGAEFWAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGVKEPRTRRRVVREVTKTNISSTQPIKFTMAVCFMLCAYILPAQNNHFFAYNTVSLEKIDKSLLERRYYSDADESYTVDTITYDLLSGINLWDGYSRTTYDNTMFMTYGTQNFEYYPAAGVWKYKNKYYDYIGLLKFVSKYFKRNFLNKKITYGKIRRH
Ga0315291_100224887	F054865	N/A	MEVKTNRFIIKYKEGIVSVAANDLTEAIERFKELRIETTAKELTIVPADEMFKRKSEIFKGSD