Scaffold Ga0307377_10216391

Overview

Basic Information

• Taxon OID: 3300031673
• Scaffold ID: Ga0307377_10216391
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - TR-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1483
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060855	Metagenome	132	Y
F074796	Metagenome / Metatranscriptome	119	Y
F077031	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307377_102163912	F074796	N/A	MNNLSEEPEDIIDLVSKTEYLKINTELGEIKLEAYNQINIQPDKTPFGIKIEVEESGDVKPILTFDTKKLRQPKKNIDAKQILDDALEDFLNG
Ga0307377_102163913	F060855	GAGG	MGKFNIFEFKFGKEKKPLKEWIKIGAIVHFSLDVISLIPGVEKRKLFNLVDEFQLKLNIEMLNDYIIQDTELLSYRIDRVVTKSIEEYENPS
Ga0307377_102163914	F077031	GAGG	MKIPPETPDFSFSLRLTPKRSLIAVLVASVLTFATVRCGISQEDALKFYNELRKAIKFDLPDENNILNEIDNQLNEKINRNPKLLEYKVRREVDSAILIYENWEQSNRQINMKNKNILGEINKPKYDKLQKLIVENAVYYEFSDGTMGIRGAWVAPDPREMSLE