Scaffold Ga0307374_10000589

Overview

Basic Information

• Taxon OID: 3300031670
• Scaffold ID: Ga0307374_10000589
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - OX-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 69189
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (53.16%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061217	Metagenome	132	Y
F083418	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307374_100005895	F061217	AGGCGG	MHAVQKPVWKTSSFLVYTGGLTVLFAAVAALSYLSGHYGKGALTAWALLVLVVLYTIANGFRHRGRWVAAGLFAYASVIAWAAFVAIAWSWFGWLHSSKFSDFSLGRLTLELLVLITAIYDRRRFEFPFITSIVAVVQWVFVIDLISSGGTWTKVVTLFVGLAYFVAGAVSRSPSAFWLHLVGGALIGGVLLDWWHSTDTDWALIAAVSLVYVFIAYTTKRSSWAVYGTIGFLGATIHYLVSTAGSTSIGGLGLQVSVPSISGWSPSVAFACLGFWLVLLGVAGRRSRSQ
Ga0307374_1000058978	F083418	AGGAG	VRMHPLLFITVHNALRLKEVSAALVAIAGALMAFGSMIPLGRRGGTWLAGLALLIAGVLAVIALHWGK