Metagenome / Metatranscriptome Family F083418

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F083418
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	69 residues
Representative Sequence	MHPLLFVIKLHTTIRLKELAAALIAIAGALMVLGSMMPMGRRGGQWLAGLALAGAGVIAVIALHWGAK
Number of Associated Samples	83
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	45.54 %
% of genes near scaffold ends (potentially truncated)	23.89 %
% of genes from short scaffolds (< 2000 bps)	74.34 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (82.301 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (15.044 % of family members)
Environment Ontology (ENVO)	Unclassified (18.584 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.558 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.46% β-sheet: 0.00% Coil/Unstructured: 38.54%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.67
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.67
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF01035	DNA_binding_1	43.36
PF00486	Trans_reg_C	35.40
PF04545	Sigma70_r4	6.19
PF00294	PfkB	4.42
PF00027	cNMP_binding	1.77
PF13714	PEP_mutase	1.77
PF03717	PBP_dimer	0.88
PF07883	Cupin_2	0.88
PF01381	HTH_3	0.88
PF09924	LPG_synthase_C	0.88
PF04101	Glyco_tran_28_C	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0350	DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase)	Replication, recombination and repair [L]	43.36
COG3695	Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain	Transcription [K]	43.36
COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	Cell cycle control, cell division, chromosome partitioning [D]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.30 %
Unclassified	root	N/A	17.70 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.30 %
Unclassified	root	N/A	17.70 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.30 %
Unclassified	root	N/A	17.70 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	67.26 %
Unclassified	root	N/A	17.70 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	67.26 %
Unclassified	root	N/A	17.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.70 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.70 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	4.42 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	17.70 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.42 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001356\|JGI12269J14319_10270974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	623	Open in IMG/M
3300001418\|JGI20188J14859_1008512	Not Available	1318	Open in IMG/M
3300005171\|Ga0066677_10145630	All Organisms → cellular organisms → Bacteria	1294	Open in IMG/M
3300005176\|Ga0066679_10054724	All Organisms → cellular organisms → Bacteria	2311	Open in IMG/M
3300005176\|Ga0066679_10301019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1042	Open in IMG/M
3300005176\|Ga0066679_10336735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	985	Open in IMG/M
3300005179\|Ga0066684_10588616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	747	Open in IMG/M
3300005187\|Ga0066675_10415048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	995	Open in IMG/M
3300005332\|Ga0066388_101102343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1344	Open in IMG/M
3300005332\|Ga0066388_103518270	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300005434\|Ga0070709_10017495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4113	Open in IMG/M
3300005434\|Ga0070709_10572174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	867	Open in IMG/M
3300005435\|Ga0070714_100049236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3587	Open in IMG/M
3300005435\|Ga0070714_100221908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1737	Open in IMG/M
3300005436\|Ga0070713_100039904	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3814	Open in IMG/M
3300005436\|Ga0070713_102219980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	532	Open in IMG/M
3300005445\|Ga0070708_101736069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	580	Open in IMG/M
3300005454\|Ga0066687_10164292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1185	Open in IMG/M
3300005467\|Ga0070706_100145740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2211	Open in IMG/M
3300005471\|Ga0070698_100045396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4497	Open in IMG/M
3300005471\|Ga0070698_100457443	All Organisms → cellular organisms → Bacteria	1212	Open in IMG/M
3300005529\|Ga0070741_10075774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3744	Open in IMG/M
3300005529\|Ga0070741_10093686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3222	Open in IMG/M
3300005529\|Ga0070741_10165837	Not Available	2196	Open in IMG/M
3300005529\|Ga0070741_10438698	All Organisms → cellular organisms → Bacteria	1193	Open in IMG/M
3300005536\|Ga0070697_101065693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	719	Open in IMG/M
3300005538\|Ga0070731_10002400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	17924	Open in IMG/M
3300005538\|Ga0070731_10084677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2102	Open in IMG/M
3300005542\|Ga0070732_10087067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1832	Open in IMG/M
3300005542\|Ga0070732_10099153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1716	Open in IMG/M
3300005542\|Ga0070732_10627373	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	653	Open in IMG/M
3300005557\|Ga0066704_10889093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	551	Open in IMG/M
3300005561\|Ga0066699_10211784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1354	Open in IMG/M
3300005578\|Ga0068854_101642573	Not Available	586	Open in IMG/M
3300005892\|Ga0075275_1001317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3278	Open in IMG/M
3300005900\|Ga0075272_1005115	All Organisms → cellular organisms → Bacteria	2673	Open in IMG/M
3300005900\|Ga0075272_1099434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	559	Open in IMG/M
3300005904\|Ga0075280_10128083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	537	Open in IMG/M
3300006028\|Ga0070717_10158663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1961	Open in IMG/M
3300006032\|Ga0066696_10606973	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	710	Open in IMG/M
3300006032\|Ga0066696_10650098	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300006794\|Ga0066658_10295145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	867	Open in IMG/M
3300006800\|Ga0066660_10186255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1570	Open in IMG/M
3300009093\|Ga0105240_10389245	All Organisms → cellular organisms → Bacteria	1573	Open in IMG/M
3300009137\|Ga0066709_102994941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	620	Open in IMG/M
3300010321\|Ga0134067_10159877	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300010373\|Ga0134128_10524349	All Organisms → cellular organisms → Bacteria	1320	Open in IMG/M
3300010379\|Ga0136449_101255012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1160	Open in IMG/M
3300010379\|Ga0136449_102378900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	765	Open in IMG/M
3300010866\|Ga0126344_1352939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	523	Open in IMG/M
3300010877\|Ga0126356_10834149	Not Available	684	Open in IMG/M
3300010877\|Ga0126356_11022189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	766	Open in IMG/M
3300010880\|Ga0126350_10229639	Not Available	698	Open in IMG/M
3300010880\|Ga0126350_10521524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2228	Open in IMG/M
3300010880\|Ga0126350_12199907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1826	Open in IMG/M
3300010880\|Ga0126350_12337529	Not Available	708	Open in IMG/M
3300012202\|Ga0137363_11179017	Not Available	652	Open in IMG/M
3300012982\|Ga0168317_1000234	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	42043	Open in IMG/M
3300013307\|Ga0157372_13303198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	514	Open in IMG/M
3300017924\|Ga0187820_1004677	All Organisms → cellular organisms → Bacteria	3172	Open in IMG/M
3300017924\|Ga0187820_1022949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1581	Open in IMG/M
3300017924\|Ga0187820_1070714	Not Available	969	Open in IMG/M
3300017927\|Ga0187824_10148483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	776	Open in IMG/M
3300017930\|Ga0187825_10021430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2168	Open in IMG/M
3300017937\|Ga0187809_10000294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	29336	Open in IMG/M
3300017944\|Ga0187786_10090605	Not Available	1010	Open in IMG/M
3300017966\|Ga0187776_10074970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1969	Open in IMG/M
3300017993\|Ga0187823_10014105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1939	Open in IMG/M
3300017994\|Ga0187822_10161104	Not Available	727	Open in IMG/M
3300018433\|Ga0066667_11217567	Not Available	656	Open in IMG/M
3300018468\|Ga0066662_10778670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	925	Open in IMG/M
3300019888\|Ga0193751_1000718	All Organisms → cellular organisms → Bacteria	24043	Open in IMG/M
3300019888\|Ga0193751_1159931	Not Available	798	Open in IMG/M
3300021372\|Ga0213877_10084468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	950	Open in IMG/M
3300025504\|Ga0208356_1009517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2216	Open in IMG/M
3300025664\|Ga0208849_1081714	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300025910\|Ga0207684_10124099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2215	Open in IMG/M
3300025913\|Ga0207695_10682480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	908	Open in IMG/M
3300025928\|Ga0207700_10104943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2262	Open in IMG/M
3300025929\|Ga0207664_10001976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	13497	Open in IMG/M
3300025929\|Ga0207664_10168060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1875	Open in IMG/M
3300025990\|Ga0208527_1003239	All Organisms → cellular organisms → Bacteria	2084	Open in IMG/M
3300026021\|Ga0208140_1001893	All Organisms → cellular organisms → Bacteria	3082	Open in IMG/M
3300026318\|Ga0209471_1071743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1546	Open in IMG/M
3300026318\|Ga0209471_1263388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	583	Open in IMG/M
3300026322\|Ga0209687_1089017	Not Available	1004	Open in IMG/M
3300026548\|Ga0209161_10122829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1534	Open in IMG/M
3300026550\|Ga0209474_10671390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	535	Open in IMG/M
3300027568\|Ga0208042_1125603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	646	Open in IMG/M
3300027842\|Ga0209580_10018637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3068	Open in IMG/M
3300027842\|Ga0209580_10233929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	913	Open in IMG/M
3300027869\|Ga0209579_10006865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7475	Open in IMG/M
3300027905\|Ga0209415_10225533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1726	Open in IMG/M
3300028556\|Ga0265337_1067306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	987	Open in IMG/M
3300028573\|Ga0265334_10197445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	700	Open in IMG/M
3300031235\|Ga0265330_10096093	Not Available	1270	Open in IMG/M
3300031247\|Ga0265340_10367627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	635	Open in IMG/M
3300031250\|Ga0265331_10309021	Not Available	708	Open in IMG/M
3300031251\|Ga0265327_10497253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	525	Open in IMG/M
3300031446\|Ga0170820_13228005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	571	Open in IMG/M
3300031670\|Ga0307374_10000589	All Organisms → cellular organisms → Bacteria	69189	Open in IMG/M
3300031715\|Ga0307476_10753085	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300031718\|Ga0307474_11171975	Not Available	608	Open in IMG/M
3300031754\|Ga0307475_10157480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1806	Open in IMG/M
3300031754\|Ga0307475_10836465	Not Available	729	Open in IMG/M
3300031754\|Ga0307475_11576868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	502	Open in IMG/M
3300032770\|Ga0335085_11782916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	631	Open in IMG/M
3300032783\|Ga0335079_10454233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1373	Open in IMG/M
3300032805\|Ga0335078_10764938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1184	Open in IMG/M
3300032828\|Ga0335080_11223918	Not Available	754	Open in IMG/M
3300032828\|Ga0335080_11363883	Not Available	706	Open in IMG/M
3300032829\|Ga0335070_10283346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1612	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.15%
Host-Associated	Host-Associated	8.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.07%
Plants	Host-Associated → Plants	8.85%
Aquatic	Environmental → Aquatic	7.08%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.19%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.96%
Freshwater	Environmental → Aquatic → Freshwater	7.08%
Geologic	Environmental → Terrestrial → Geologic	0.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.10%
Loam	Environmental → Terrestrial → Soil → Loam	16.81%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.39%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.08%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.65%
Clay	Environmental → Terrestrial → Soil → Clay	0.89%
Mine	Environmental → Terrestrial → Geologic → Mine	0.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.43%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	17.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.16%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	12.39%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	7.08%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.31%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.65%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.77%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Geologic → Mine → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	15.04%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	11.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.62%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	7.08%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	6.19%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.31%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	5.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	5.31%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.42%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	3.54%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.77%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.89%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.89%
Weathered Mine Tailings	Environmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001418	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005892	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_305	Environmental	Open in IMG/M
3300005900	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_404	Environmental	Open in IMG/M
3300005904	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_404	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010866	Boreal forest soil eukaryotic communities from Alaska, USA - C1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010877	Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012982	Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCWfield	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300025504	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025664	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025990	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_80N_102 (SPAdes)	Environmental	Open in IMG/M
3300026021	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_404 (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028556	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG	Host-Associated	Open in IMG/M
3300028573	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG	Host-Associated	Open in IMG/M
3300031235	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG	Host-Associated	Open in IMG/M
3300031247	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG	Host-Associated	Open in IMG/M
3300031250	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG	Host-Associated	Open in IMG/M
3300031251	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG	Host-Associated	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031670	Soil microbial communities from Risofladan, Vaasa, Finland - OX-3	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_102709742	3300001356	Peatlands Soil	MHPILFAISKHNGIRLEELAAALVAVAGALMLLGASVPLGKRGGQWLAGLGLVVAGVLAVIGLHWGHVAG*
JGI20188J14859_10085121	3300001418	Arctic Peat Soil	MHPLLFITVHNALRLKEVSAALVAIAGALMAFGSMMPLGRRGGTWLAGLALIIAGVLGVIALHWGK*
Ga0066677_101456302	3300005171	Soil	MHSLLAITAHNALRLKEVSAALVAVAGAVMVLGSTMPMGRRGGQWIAGLALAAAGVLAVVALHWGK*
Ga0066679_100547241	3300005176	Soil	TIRLKELAAALIAIAGALMVLGSMMPMGRRGGQWLAGLALAGAGVIAVIALHWGAK*
Ga0066679_103010191	3300005176	Soil	VYPSDQGETISGMHPLLFVIKLHTTIRLKELAAALIAVAGALMVIGAMMPMGRRGGQWLAGLALAGAGVIAVIALHWG
Ga0066679_103367351	3300005176	Soil	MHSLLAITAHNALRLKEVSAALVAVAGAVMVLGSTMPMGRRGGQWIAGLALAVAGVLAVVALHWGK*
Ga0066684_105886162	3300005179	Soil	MSGMHPLLFVIKLHTTIRLKELAAALIAVAGGVMVIGSMMPMGRRGGQWLAGLALAAAGVIAVIALHWGAK*
Ga0066675_104150482	3300005187	Soil	MHLLLFLIKPHTTGRLKEVAAALIAVAGALMVIGSMMPMGRRGGQWFAGLALAAGGVIAVIALHWGAK*
Ga0066388_1011023432	3300005332	Tropical Forest Soil	MHSLLAITAHNAIRLEEVAAALVAIAGGILVLGSMSPMGRRGSQSLSGLCFAIGGVLAVVALHWGT*
Ga0066388_1035182702	3300005332	Tropical Forest Soil	MAAASRIVPAMHSLLATFTLHTTIRLKEVGAALVAIGGGFLLIGAMTPMGRRGGQWLGGLALAAGGVLAVVALHWGTN*
Ga0070709_100174955	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MSSLLAITAHNANRLEEVAAALVAIAGGIMVLGSMTPMGRRGSQWLSGLCFAVSGVLAVIALHWRR*
Ga0070709_105721741	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	GETMSGMHPLLFVIKLHTTIRLKELAAALIAVAGGLMVIGSMMPMGRRGGQWLAGLALAAAGVIAVIALHWGAK*
Ga0070714_1000492365	3300005435	Agricultural Soil	MSSLLAITAHNANRLEEVAAALVAIAGGIMVLGSMTPMGRRGSQWLSGLCFAVSGVLAVIALHWAR*
Ga0070714_1002219083	3300005435	Agricultural Soil	MSGMHPLLFVIKLHTTIRLKELAAALIAVAGGLMVIGSMMPMGRRGGQWLAGLALAAAGVIAVIALHWGAK*
Ga0070713_1000399043	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSGMHPLLFVIKLHTTIRLKELAAALIAVAGGLMVIGSMMPMGRRGGQWLAGLALAAAGVIGVIALHWGAK*
Ga0070713_1022199802	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	TTVRLKEVAAALIAVAGALMVIGSMMPMGKRGGQWLAGLALAAAGVIAVIALHWGTK*
Ga0070708_1017360692	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MYLLAFTIKQHTMIRLEELGAALGAVAGGLLFLGAMAPMGRRGAQLLAGLSLAAAGVIVVIALHWGT*
Ga0066687_101642923	3300005454	Soil	VYPSDEWETMSGMHLFLFLIKPHTTGRLKEVAAALIAVAGALMVVGSMMPMGRRGGQWFAGLALAAGGVIAVIALHWGAK*
Ga0070706_1001457403	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MYLFAFTIKQHTMIRLEEVGAALGAVAGGLLFLGAMAPMGRRGSQLLAGLALAAAGVIVVIALHWGT*
Ga0070698_1000453964	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MYLLAFTIKQHTMIRLEELGAALGAVAGGLLFLGAMAPMGRRGAQLLAGLSLAAGGVIVVIALHWGT*
Ga0070698_1004574432	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MHPLLAITAHNANRLEEVAAALVAIAGGIMVLGSMSPLGRRGSQSLSGLCFAVAGVLAVIALHWGK*
Ga0070741_100757744	3300005529	Surface Soil	MSAMHALLFLIKPHTTTRLKELAAALIAVAGALMVVGSMMPMGKRGGQWLAGLALAAAGVIAVIALHWGTK*
Ga0070741_100936863	3300005529	Surface Soil	MHPLLGLTVQSANRLEEVAGALIAIAGGVMVLGSMTPMGRRGSQWLSGLALAVAGVLLVIGLHWRHK*
Ga0070741_101658374	3300005529	Surface Soil	MHPFLFLTVHDANRLKELAAALIAVAGVVMLLGAMAPMGRRGSQWLAGLALAVAGVLAVVALHWGGR*
Ga0070741_104386982	3300005529	Surface Soil	MSGMHPLLFLIKLHTAVRLKEVAAALIAVAGALMVIGSMMPMGRRGGQWLAGLALAAAGVIAVIALHWGAPK*
Ga0070697_1010656932	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MHPLLAITAHNANRLEEVAAALVAIAGGIMVLGSTSPLGRRGSQSLSGLCFAVAGVLAVIALHWGK*
Ga0070731_1000240016	3300005538	Surface Soil	MHPLLFLTVHDANRLKELAAALIAVAGVVMLLGAMAPMGRRGSQWLAGLALAVAGVLAVVALHWGGR*
Ga0070731_100846773	3300005538	Surface Soil	MHTFVLGLTVHNAIRLEEVAGALIAIGGALMFVGSMMPMGRRGSQWLAGLAFAVAGVLAVIALHWGTR*
Ga0070731_101306962	3300005538	Surface Soil	MNLLFAITKHNTLRVQELAGALTAVAGAALLFGAAMPMGRRGGQLLGGLLLAIAGVIVVVAFHWGTHP*
Ga0070732_100870674	3300005542	Surface Soil	IRLKELAAALIAIAGALMVLGSMMPMGRRGSQWLSGLALAVAGVIAVIALHWGAK*
Ga0070732_100991533	3300005542	Surface Soil	MHSLLFVIKLHTTIRLKELAAALIAIAGAVMVLGSMMPMGRRGSQWFAGLALAVAGVIAVIALHWGAK*
Ga0070732_106273732	3300005542	Surface Soil	MHPLLAITAHNALRLREVSAALVAIAGALMVLGTMMPMGRRGGQWLAGLALIVAGVLAVVALHWAR*
Ga0066704_108890932	3300005557	Soil	GETMSGMHPLLFVIKLHTTIRLKELAAALIAVAGALMVIGAMMPMGRRGGQWLAGLALAGAGVIAVIALHWGAK*
Ga0066699_102117843	3300005561	Soil	MHLLLFLIKPHTTGRLKEVAAALIAVAGALMVVGSMMPMGRRGGQWLAGLALAAGGVIAVIALHWGAK*
Ga0068854_1016425732	3300005578	Corn Rhizosphere	MHPLLAITAHNAIRLREVAAALIAIAGAIMVLGSMMPMGRRGSTWLSGLAFAVAGVLGVI
Ga0075275_10013174	3300005892	Rice Paddy Soil	MHPLLFITVHNALRLKEVAAALVAIAGGLMFLGATMPMGRRGGQWLAGLALAIGGVLAVIALHWGH*
Ga0075272_10051151	3300005900	Rice Paddy Soil	SVSVRSPGDHVGMHPLLFITAHNALRLKEVAAALVAIAGGLMFLGATMPMGRRGGQWLAGLALAIGGVLAVIALHWGH*
Ga0075272_10994341	3300005900	Rice Paddy Soil	MPMHPLLFMTMHNALRLKEVAAALVAIAGGLMFLGAMMPMGRRGGQWLAGLALAIAGVLAVIALHWG*
Ga0075280_101280832	3300005904	Rice Paddy Soil	HNALRLKEVAAALIAIAGALLFFGATMPMGRRGGQWLAGLALAIAGVLAVVALHWGK*
Ga0070717_101586632	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRVYPSDEGETMSGMHPLLFVIKLHTTIRLKELAAALIAVAGGLMVIGSMMPMGRRGGQWLAGLALAAAGVIAVIALHWGAK*
Ga0066696_106069732	3300006032	Soil	GAWGTSSVRLRRDHVRMHSLLAITAHNALRLKEVSAALVAVAGAVMVLGSTMPMGRRGGQWIAGLALAVAGVLAVVALHWGK*
Ga0066696_106500981	3300006032	Soil	PFLFVIKLHTTIRLKELAAALIAVAGALMVIGSMMPMGRRGGQWLAGLALAGAGVIAVIALHWGAK*
Ga0066658_102951452	3300006794	Soil	MSGMHPFLFVIKLHTTIRLKELAAALIAVAGALMVIGSMMPMGRRGGQWLAGQALAGAGVIAVIALHWGAK*
Ga0066660_101862553	3300006800	Soil	MHPLLFVIKLHTTIRLKELAAALIAIAGALMVLGSMMPMGRRGGQWLAGLALAGAGVIAVIALHWGAK*
Ga0105240_103892453	3300009093	Corn Rhizosphere	MHPLLAITAHNAIRLREVAAALIAIAGAIMVLGSMMPMGRRGSTWLSGLAFAVAGVLGVIALPWGGK*
Ga0066709_1029949412	3300009137	Grasslands Soil	VYLSDEVETMSGMHPLLFVIKLHTTIRLKELAAALIAIAGGVMVIGSMMQMGRPGGQGPAGLALAAAGAIAVIALHWVAKE*
Ga0134067_101598772	3300010321	Grasslands Soil	VYPSDEAETMSGMHPLLFVIKLHTTIRLKELAAALIAIAGGVMVIGSMMPMGRRGGQWLAGLALAAAGVIAVIALHWGAK*
Ga0134128_105243492	3300010373	Terrestrial Soil	VYPSDEGETMSGMHPLLFVIKLHTTIRLKELAAALIAVAGGLMVIGSMMPMGRRGGQWLAGLALAAAGVIAVIALHWGAK*
Ga0136449_1012550123	3300010379	Peatlands Soil	MQSLLFAISKHNGVRLEELAAALVAVAGALMLLGASMPLGKRGGQWLAGLGLIVAGVLAVIGLHWGHVAG*
Ga0136449_1023789002	3300010379	Peatlands Soil	MHPLLAMTAHNGLRLREVAAALVAIAGAVMLLGAMMPMGRRGGQWLAGLALALAGVLAVIGLHWGHG*
Ga0126344_13529392	3300010866	Boreal Forest Soil	QRVGRGVQAPSDGGVTIVDMHPLLFITVHNALRLKEVSAALVAIAGALMVFGSMMPLGRRGGTWLAGLALIIAGVLGVIALHWGK*
Ga0126356_108341492	3300010877	Boreal Forest Soil	VTIAGMHPLLFITVHNALRLREVSAALVAIAGAFMAFGSMMPLGRRGSTWFAGLALLIAGVLAVIALHWGK*
Ga0126356_110221891	3300010877	Boreal Forest Soil	LKEVSAALVAIAGALMSFGSMMPLGRRGGTWLAGLALIIAGVLGVIAFHWGK*
Ga0126350_102296391	3300010880	Boreal Forest Soil	MHPLLAITAHNRIRLEEVAAALIAIAGAVMLFGSMAPMGRRGSQSLSGLCFVVAGVLAVIALHWGK*
Ga0126350_105215243	3300010880	Boreal Forest Soil	VTIVGMHPLLFITVHNALRLKEVSAALVAIAGALMVFGSMMPLGRRGGTWLAGLALIIAGVLGVIALHWGK*
Ga0126350_121999072	3300010880	Boreal Forest Soil	VTIVGMHPLLFITVHNALRLREVSAALVAIAGALMAFGSMMPLGRRGGTWLAGLALLIAGVLGVIALHWGT*
Ga0126350_123375292	3300010880	Boreal Forest Soil	VTIVAMHPLLFITVHNALRLREVSAALVAIAGALMTFGSMMPLGRRGGTWLAGLALIIAGVLGVIALHWGK
Ga0137363_111790172	3300012202	Vadose Zone Soil	MYSLLAITAHNANRLEEVASALVAIAGGIMVLGSMSPMGRRGSQSLSGLCFAVAGVLAVVALHWAR*
Ga0168317_100023427	3300012982	Weathered Mine Tailings	MHLLFLTTHNALRLEEVAGALVAIAGAVMVLGSMAPMGRRGSQWLAGLAFAIAGVLAVIALHWGHK*
Ga0157372_133031981	3300013307	Corn Rhizosphere	KLHTTIRLKELAAALIAVAGGLMVIGSMMPMGRRGGQWLAGLALAAAGVIAVIALHWGAK
Ga0187820_10046772	3300017924	Freshwater Sediment	MHPLLFLTVHDANRLKELAAALIAVAGVVMLLGAMAPMGRRGSQWLAGLALAVAGVLAVVALHWGGR
Ga0187820_10229492	3300017924	Freshwater Sediment	MHPLLFITVHNSLRLKEVAGALIAIAGGVMVLGSMMPLGRRGSQWLAGLALALGGVILVIALHWGHG
Ga0187820_10707141	3300017924	Freshwater Sediment	MHPLLFMTVHNSLRLKEVAGALIAIAGGVMVLGSMMPMGRRGSQWLSGLALALGGVILVIALHWGHG
Ga0187824_101484832	3300017927	Freshwater Sediment	MHPFLFLTVHNANRLEEVAGALIAIAGGVMVLGSMMPMGRRGSQWLSGLALALAGVLLVIGLHWGHK
Ga0187825_100214303	3300017930	Freshwater Sediment	MHPLLFITVHNSLRLKEVAGALIAIAGGVMVLGSMMPLGRRGSQWLSGLALALGGVILVIALHWGHG
Ga0187809_1000029418	3300017937	Freshwater Sediment	MHPLLFLTVHDANRLKELAAALIAVAGVVMLLGAMAPMGRCGSQWLAGLALAVAGVLAVVALHWGGR
Ga0187786_100906051	3300017944	Tropical Peatland	MHPLIAMTAHNALRLREVAAALVAIAGGLLFLGAMMPMGRRGSQWLAGLALAIGGVLA
Ga0187776_100749704	3300017966	Tropical Peatland	MHSILFTFTLHTTIRLKEVAAALVAVAGGLLLLGAMMPIGRRGGQWFAGLALAAAGVIGVIALHWGAIK
Ga0187823_100141053	3300017993	Freshwater Sediment	MHPLLFIAVHNSLRLKEVAGALIAIAGGVMVLGSMMPLGRRGSQWLAGLALALGGVILVIALHWGHG
Ga0187822_101611041	3300017994	Freshwater Sediment	MHPLLGLTVHNANRLEEVAGALIAIAGGVMVLGSMMPMGRRGSQWLSGLALAIAGVLFVIGRHWGHH
Ga0066667_112175672	3300018433	Grasslands Soil	MSGMHPLLFVIKLHTTIRLKELAAALIAIAGGVMVIGSMMPMGRRGGQWLAGLALAAAGVIAVIALHWGAK
Ga0066662_107786702	3300018468	Grasslands Soil	MHPLLFVIKLHTTIRLKELAAALIAIAGALMVLGSMMPMGRRGGQWLAGLALAGAGVIAVIALHWGAK
Ga0193751_100071827	3300019888	Soil	MHPLLFITVHNALRLKELSAALVAIAGALMAFGSMMPLGRRGGTWLAGLALIIAGVLGVIALHWGK
Ga0193751_11599311	3300019888	Soil	MDPLLAMTVHNGLRLREVAAALVAIAGVLMAFGSMMPLGRRGGTWLAGLALAIAGVLGVIGLHWGHG
Ga0213877_100844682	3300021372	Bulk Soil	MHTLVLGLTVHNAIRLEEVAGALIAIGGGLMFVGSMMPLGRRGSQWLAGLCFAVAGVLAVIALHWGTR
Ga0208356_10095174	3300025504	Arctic Peat Soil	VGMHPLLFITVHNALRLKEVSAALVAIAGALMAFGSMMPLGRRGGTWLAGLALIIAGVLGVIALHWGK
Ga0208849_10817142	3300025664	Arctic Peat Soil	MGMHPLLFITVHNTIRLKEVSAALVAIAGALMSFGSMMPLGRRGGTWLAGLALIIAGVLGVIAFHWGK
Ga0207684_101240992	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MYLFAFTIKQHTMIRLEEVGAALGAVAGGLLFLGAMAPMGRRGSQLLAGLALAAAGVIVVIALHWGT
Ga0207695_106824802	3300025913	Corn Rhizosphere	MHPLLAITAHNAIRLREVAAALIAIAGAIMVLGSMMPMGRRGSTWLSGLAFAVAGVLGVIALHWGGK
Ga0207700_101049433	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VYLSDEGETMSGMHPLLFVIKLHTTIRLKELAAALIAVAGGLMVIGSMMPMGRRGGQWLAGLALAAAGVIGVIALHWGAK
Ga0207664_1000197618	3300025929	Agricultural Soil	VGRRVQAAPLIRVYPSDEGETMSGMHPLLFVIKLHTTIRLKELAAALIAVAGGLMVIGSMMPMGRRGGQWLAGLALAAAGVIAVIALHWGAK
Ga0207664_101680603	3300025929	Agricultural Soil	VYLSDEGETMSGMHPLLFVIKLHTTIRLKEVAAALIAVAGGLMVIGSMMPMGRRGGQWLAGLALAAAGVIGVIALHWGAK
Ga0208527_10032394	3300025990	Rice Paddy Soil	MHPLLFITVHNALRLKEVAAALVAIAGGLMFLGATMPMGRRGGQWLAGLALAIGGVLAVIALHWGH
Ga0208140_10018931	3300026021	Rice Paddy Soil	SVSVRSPGDHVGMHPLLFITAHNALRLKEVAAALVAIAGGLMFLGATMPMGRRGGQWLAGLALAIGGVLAVIALHWGH
Ga0209471_10717432	3300026318	Soil	MHPLLFVIKLHTTIRLKELAAALIAVAGALMVIGAMMPMGRRGGQWLAGLALAGAGVIAVIALHWGAK
Ga0209471_12633882	3300026318	Soil	MHSLLAITAHNALRLKEVSAALVAVAGAVMVLGSTMPMGRRGGQWIAGLALAVAGVLAVVALHWGK
Ga0209687_10890171	3300026322	Soil	MSGMHPLLFVIKLHTTIRLKELAAALIAVAGGVMVIGSMMPMGRRGGQWLAGLALAAAGVIAVIALHWGAK
Ga0209161_101228294	3300026548	Soil	AITAHNALRLKEVSAALVAVAGAVMVLGSTMPMGRRGGQWIAGLALAVAGVLAVVALHWG
Ga0209474_106713901	3300026550	Soil	DQGETMSGMHPFLFVIKLHTTIRLKELAAALIAVAGALMVIGSMMPMGRRGGQWLAGLALAGAGVIAVIALHWGAK
Ga0208042_11256032	3300027568	Peatlands Soil	MHPILFAISKHNGIRLEELAAALVAVAGALMLLGASVPLGKRGGQWLAGLGLVVAGVLAVIGLHWGHVAG
Ga0209580_100186374	3300027842	Surface Soil	MHSLLFVIKLHTTIRLKELAAALIAIAGAVMVLGSMMPMGRRGSQWFAGLALAVAGVIAVIALHWGAK
Ga0209580_102339292	3300027842	Surface Soil	MHALLFVIKLHTTIRLKELAAALIAIAGALMVLGSMMPMGRRGSQWLSGLALAVAGVIAVIALHWGAK
Ga0209579_100068655	3300027869	Surface Soil	MHTFVLGLTVHNAIRLEEVAGALIAIGGALMFVGSMMPMGRRGSQWLAGLAFAVAGVLAVIALHWGTR
Ga0209415_102255333	3300027905	Peatlands Soil	MHPLLAMTAHNGLRLREVAAALVAIAGAVMLLGAMMPMGRRGGQWLAGLALALAGVLAVIGLHWGHG
Ga0265337_10673063	3300028556	Rhizosphere	MCPMHPLLFLTVHNALRLKEVAAALVAIAGGLMFLGAMMPMGRRGGQWLAGLALAIAGVLAVIALHWGHG
Ga0265334_101974451	3300028573	Rhizosphere	YPSDGKATMCPMHPLLFLTVHNALRLKEVAAALVAIAGGLMFLGAMMPMGRRGGQWLAGLALAIAGVLAVIALHWGHG
Ga0265330_100960934	3300031235	Rhizosphere	MCPMHPLLFMTLHNALRLKEVAAALVAIAGGLMFLGAMMPMGRRGGQWLAGLALAIAGVLAVIALHWGHG
Ga0265340_103676272	3300031247	Rhizosphere	MCPMHPLLFMTLHNALRLKEVAAALVAIAGGLMFLGAMMPMGRRGGQWLAGLALAIAGVLAVIALHWGPV
Ga0265331_103090213	3300031250	Rhizosphere	MHPLLFLTVHNALRLKEVAAALVAIAGGLMFLGAMMPMGRRGGQWLAGLALAIAGVLAVI
Ga0265327_104972531	3300031251	Rhizosphere	PGRIRDSPEERPYPSDGKATMCPMHPLLFLTVHNALRLKEVAAALVAIAGGLMFLGAMMPMGRRGGQWLAGLALAIAGVLAVIALHWGHG
Ga0170820_132280052	3300031446	Forest Soil	MTVHNGLRLREVAAALVAIAGVLMAFGSMMPLGRRGGTWLAGLALAIAGVLGVIGLHWGH
Ga0307374_1000058978	3300031670	Soil	VRMHPLLFITVHNALRLKEVSAALVAIAGALMAFGSMIPLGRRGGTWLAGLALLIAGVLAVIALHWGK
Ga0307476_107530852	3300031715	Hardwood Forest Soil	MHPLLFLTVHNALRLEEVAGALIAIGGAVMLLGSMAPMGRRGSQWLSGLAFAIAGVLAVIALHWGHK
Ga0307474_111719752	3300031718	Hardwood Forest Soil	MHPLLAITAHNRIRLEEVAAALIAIAGAVMLFGSMAPLGRRGSQGLSGICFVVAGVLAVVALHWG
Ga0307475_101574802	3300031754	Hardwood Forest Soil	MHSLLAITLHNTIRLKEVASALVAIAGGVMVLGAMSPMGRRGSQSLSGLCFAVAGVLAVIALHWGK
Ga0307475_108364652	3300031754	Hardwood Forest Soil	MHPLLAITAHNRIRLEEVAAALIAIAGAVMLFGSMAPLGRRGSQGLSGICFVVAGVLAVVALHWGK
Ga0307475_115768681	3300031754	Hardwood Forest Soil	SSPYRPAMHTMLFTFKLHTTLRLKEVAAALVALAGGFLILGAVTPMGRRGGQWLAGLALAAGGVVGVIALHWGKI
Ga0335085_117829162	3300032770	Soil	MHPLLGLTVHNGYRLEEIAAALVAVAGVLMLLGSSMPLGRRGGQWFAGLLLVIAGVLAVIGLHWGIRS
Ga0335079_104542333	3300032783	Soil	MHPLLFLTVHDANRLKELAAALIAVAGVVMLLGSMAPMGRRGSQWLAGLALAVAGVLAVVALHWGGR
Ga0335078_107649382	3300032805	Soil	MHPLLAITAHNGLRLEEVAAALVAIAGALMLLGAMMPMGRRGGQWLAGLALALAGVLAVIGLHWGHG
Ga0335080_112239181	3300032828	Soil	HNALRLREVAAALVAIAGGLLFLGAMMPMGRRGSQWLAGLALAIGGVLAVIGLHWAR
Ga0335080_113638833	3300032828	Soil	MHPLLGLTVHNGYRLEEIAAALVAVAGVLMLLGSSMPLGRRGGQWFAGLLLAIAGVVAVIGLHWGILG
Ga0335070_102833462	3300032829	Soil	MYPLLAMAAHNALRLKEVAAALIAIAGGVMLLGTMVPMGRRGSQWLAGLALAIAGVLAVIALHWG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083418

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences