Scaffold Ga0302125_10053816

Overview

Basic Information

• Taxon OID: 3300031638
• Scaffold ID: Ga0302125_10053816
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB4_surface
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1370
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 75.0007
  • Long. (^o): -150.0027
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005012	Metagenome / Metatranscriptome	415	Y
F007392	Metagenome / Metatranscriptome	352	Y
F088272	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302125_100538163	F007392	N/A	MLFCSFAYGEEFTMICEGERTVRSFSNSELNDLDFETALLKIKKNSMEYIGLNSGRSYVFSNKEYTAPKRPPHEDIKIKVLYEFTQKTIKASQIITDIGNSEESSISRFSLSINRLTGNFSEIESISNKKTLQKSMSNNFQGLCKREDRSY
Ga0302125_100538164	F005012	GAGG	MKIILILLLLPLPSLADDLKLLCKGEETKYIEDDPNSKEVITKVIGIQLYEAGMRLDGVWFDNKSDFTEDYMLERSYVKSKDNIRGARNFSTNSFIEGRKIQTVKVDNVEINILSNEVYWMHKFNRLEITGTETDIIYAFRKNFKGTCK
Ga0302125_100538165	F088272	N/A	WFAGTGLRASFNSENNNQKKGSIFMAVILLAISYLWINTTGYWYVANEIEISGKNLLVISFFIGFLSTVKAISQINKN