Scaffold Ga0302138_10053702

Overview

Basic Information

• Taxon OID: 3300031637
• Scaffold ID: Ga0302138_10053702
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CBN3_32.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1555
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 80.9595
  • Long. (^o): -132.1842
  • Depth (m): 86

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006719	Metagenome / Metatranscriptome	366	Y
F025589	Metagenome / Metatranscriptome	201	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302138_100537022	F006719	AGG	MTNVNYTPEMVATLKAAQPIDYAKAQELGLQLDRGVRSIIAKCKREGFEYVSKPAPAKKKSAPSKVDLVAAICKGLSIDDCEGLEKATGAALNKLLSNLA
Ga0302138_100537023	F025589	GGAG	MIEIIGWVGAATMVGASFKMTKPLGLKMAIVGLSLLTIQAYSNETYNLLTLNLCSIIGFTLSLIRK