Scaffold Ga0308004_10334174

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0308004_10334174

Scaffold Ga0308004_10334174

Overview

Basic Information
Taxon OID	3300031630 Open in IMG/M
Scaffold ID	Ga0308004_10334174 Open in IMG/M
Source Dataset Name	Marine microbial communities from water near the shore, Antarctic Ocean - #38
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	577
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-68.5735	Long. (^o)	77.9231	Alt. (m)		Depth (m)	24
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020603	Metagenome	223	Y
F092711	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308004_103341741	F092711	N/A	MVQLEVTLTGRSKSFTSDTLQDCAKQFFDEFGEASKEVVKCQTFEVNNPTEFLIVGGNESCIGWLKQMQQGAIDDK
Ga0308004_103341742	F020603	AGGAG	MINKLLLIIFCSLFVANCSTYKPLINPETSKNKHNGDVIAGNYWKDLHACRYIHEKNTGIVPKVLHLSDEKIFVKKCMENYGYSILR

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