Scaffold Ga0307985_10004001

Overview

Basic Information

• Taxon OID: 3300031629
• Scaffold ID: Ga0307985_10004001
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #80
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8029
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (69.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5958
  • Long. (^o): 78.1913
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011704	Metagenome / Metatranscriptome	288	Y
F046020	Metagenome	152	N
F096067	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307985_1000400110	F046020	N/A	MWVGIILFTFSLAGQIDQHFKSRELCWEFYENHPLLYRQIDKAFPKDYYVRLYQNDEHGLVWITCNKLSDLRGNDTSKFPLNVPLPTPK
Ga0307985_1000400111	F096067	GGA	MESDFIKIYINKKEMTYSRQNMIKAINTFLLYLTNPDLDELNDRCKSLKEHRHQQEQQSKLEENRTPIQSNRYDT
Ga0307985_1000400122	F011704	N/A	MHIDNFQELIELTNLLGVTNEYVIRKFKDGGNYLIIDTYGDFLILERDEVESVFSTIWNDLYGTHPEELPYILN