Scaffold Ga0308014_1052157

Overview

Basic Information

• Taxon OID: 3300031628
• Scaffold ID: Ga0308014_1052157
• Source Dataset Name: Marine microbial communities from water near the shore, Antarctic Ocean - #229
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1006
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5596
  • Long. (^o): 77.8957
  • Depth (m): 37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020603	Metagenome	223	Y
F028622	Metagenome	191	Y
F092711	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308014_10521571	F028622	N/A	MKDEDKTFENEVSPIVKDDRGSLDLNRQIDELNIKVKNLDGLEKLHKETNGDLRVHNLKLDREIYQLKKDMAMQNETHQMDIIQKDNEIGRLI
Ga0308014_10521572	F020603	AGGAG	MINKLLLIIFCSLFVANCSTYKPLINPETSKDKHNGNVIAGNYWKDLQACNYIYTENTGILANKLGMADKKGFINKCMNDYGYSILR
Ga0308014_10521573	F092711	AGGAG	MVQLEITLTGRSKSFTGDTLQDCAKQFFDEYGEASKEVVKCQTFEVNNPTEFLIVGGNESCIGYLKQMQQGAIDDK