Scaffold Ga0302118_10018377

Overview

Basic Information

• Taxon OID: 3300031627
• Scaffold ID: Ga0302118_10018377
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - AG5_33.1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3580
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 70.5467
  • Long. (^o): -122.9077
  • Depth (m): 74

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010460	Metagenome	303	Y
F071137	Metagenome	122	Y
F079203	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302118_100183772	F079203	GGAGG	MNIADKLIKGKIELDNDELKFLLWNSLIQLSAYCDDVTSVEEESFNIEQMLSALDGQLSTQP
Ga0302118_100183773	F010460	AGGA	MDNKDIDGRVDPTTIPTHEMVQNLAEHVVDSMSHQELTQFVYDDVYSMMLEDSDVFYTNLPEHLEPEDFTNAKFRD
Ga0302118_100183777	F071137	AGGA	MGADFALATFPYFDMTEDRRERFRELIVNLPAKETYEFQEWYDLDDEESYNLEELLEDIESSCSTVNRETATITTYSKKGERYELNVTGGMTWGDSPTDVYDAFNRAAFFENVYDLAVDCSVEYIKMYT