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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F079203 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 116 |
| Average Sequence Length | 60 residues |
| Representative Sequence | MKIAEKLINDVEVSDDELKFLLWNTLIQLSAYCDDVTSVEEESFNIEQMLSTLDVELGAHP |
| Number of Associated Samples | 104 |
| Number of Associated Scaffolds | 116 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 86.21 % |
| % of genes near scaffold ends (potentially truncated) | 20.69 % |
| % of genes from short scaffolds (< 2000 bps) | 82.76 % |
| Associated GOLD sequencing projects | 91 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.43 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (41.379 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (22.414 % of family members) |
| Environment Ontology (ENVO) | Unclassified (70.690 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (90.517 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 51.69% β-sheet: 0.00% Coil/Unstructured: 48.31% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.43 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 116 Family Scaffolds |
|---|---|---|
| PF13589 | HATPase_c_3 | 6.03 |
| PF13395 | HNH_4 | 1.72 |
| PF04555 | XhoI | 1.72 |
| PF06067 | DUF932 | 1.72 |
| PF07282 | OrfB_Zn_ribbon | 0.86 |
| PF01653 | DNA_ligase_aden | 0.86 |
| PF03851 | UvdE | 0.86 |
| PF01068 | DNA_ligase_A_M | 0.86 |
| PF00583 | Acetyltransf_1 | 0.86 |
| PF01844 | HNH | 0.86 |
| COG ID | Name | Functional Category | % Frequency in 116 Family Scaffolds |
|---|---|---|---|
| COG0272 | NAD-dependent DNA ligase | Replication, recombination and repair [L] | 0.86 |
| COG1423 | ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family | Replication, recombination and repair [L] | 0.86 |
| COG1793 | ATP-dependent DNA ligase | Replication, recombination and repair [L] | 0.86 |
| COG4294 | UV DNA damage repair endonuclease | Replication, recombination and repair [L] | 0.86 |
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| Name | Rank | Taxonomy | Distribution |
| All Organisms | root | All Organisms | 58.62 % |
| Unclassified | root | N/A | 41.38 % |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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| Habitat | Taxonomy | Distribution |
| Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 22.41% |
| Aqueous | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous | 17.24% |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 14.66% |
| Estuarine | Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine | 7.76% |
| Salt Marsh | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh | 7.76% |
| Seawater | Environmental → Aquatic → Marine → Strait → Unclassified → Seawater | 5.17% |
| Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine | 4.31% |
| Pelagic Marine | Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine | 3.45% |
| Seawater | Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater | 1.72% |
| Marine | Environmental → Aquatic → Marine → Coastal → Unclassified → Marine | 1.72% |
| Seawater | Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater | 1.72% |
| Seawater | Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater | 1.72% |
| Freshwater | Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater | 0.86% |
| Seawater | Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater | 0.86% |
| Marine | Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine | 0.86% |
| Surface Seawater | Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater | 0.86% |
| Freshwater To Marine Saline Gradient | Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient | 0.86% |
| Marine | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine | 0.86% |
| Seawater | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater | 0.86% |
| Estuarine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine | 0.86% |
| Pelagic Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine | 0.86% |
| Freshwater And Marine | Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine | 0.86% |
| Marine Sediment | Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment | 0.86% |
| Deep Subsurface | Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface | 0.86% |
| Visualization |
|---|
| Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000101 | Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010 | Environmental | Open in IMG/M |
| 3300000116 | Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010 | Environmental | Open in IMG/M |
| 3300000117 | Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010 | Environmental | Open in IMG/M |
| 3300000265 | Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_10 | Environmental | Open in IMG/M |
| 3300000930 | Marine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16m | Environmental | Open in IMG/M |
| 3300001589 | Marine viral communities from the Pacific Ocean - LP-40 | Environmental | Open in IMG/M |
| 3300002231 | Marine sediment microbial communities from Santorini caldera mats, Greece - red mat | Environmental | Open in IMG/M |
| 3300002483 | Marine viral communities from the Pacific Ocean - ETNP_6_30 | Environmental | Open in IMG/M |
| 3300004097 | Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG | Environmental | Open in IMG/M |
| 3300006026 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA | Environmental | Open in IMG/M |
| 3300006165 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA | Environmental | Open in IMG/M |
| 3300006735 | Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG | Environmental | Open in IMG/M |
| 3300006737 | Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG | Environmental | Open in IMG/M |
| 3300006790 | Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG | Environmental | Open in IMG/M |
| 3300006793 | Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG | Environmental | Open in IMG/M |
| 3300006802 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 | Environmental | Open in IMG/M |
| 3300006916 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 | Environmental | Open in IMG/M |
| 3300007276 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 | Environmental | Open in IMG/M |
| 3300007344 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 | Environmental | Open in IMG/M |
| 3300007960 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG | Environmental | Open in IMG/M |
| 3300008050 | Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG | Environmental | Open in IMG/M |
| 3300009024 | Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705 | Environmental | Open in IMG/M |
| 3300009026 | Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575 | Environmental | Open in IMG/M |
| 3300009054 | Estuarine microbial communities from the Columbia River estuary - metaG S.737 | Environmental | Open in IMG/M |
| 3300009071 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405 | Environmental | Open in IMG/M |
| 3300009079 | Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 | Environmental | Open in IMG/M |
| 3300009103 | Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um | Environmental | Open in IMG/M |
| 3300009420 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 | Environmental | Open in IMG/M |
| 3300009425 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 | Environmental | Open in IMG/M |
| 3300009433 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 | Environmental | Open in IMG/M |
| 3300009435 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 | Environmental | Open in IMG/M |
| 3300009498 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426 | Environmental | Open in IMG/M |
| 3300009543 | Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_20Mar14_M2_3um Metatranscriptome (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300009593 | Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome | Environmental | Open in IMG/M |
| 3300009703 | Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaG | Environmental | Open in IMG/M |
| 3300009705 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 | Environmental | Open in IMG/M |
| 3300010149 | Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG | Environmental | Open in IMG/M |
| 3300011252 | Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2014_4, permeate | Environmental | Open in IMG/M |
| 3300012936 | Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaG | Environmental | Open in IMG/M |
| 3300012953 | Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 Metagenome | Environmental | Open in IMG/M |
| 3300017697 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2) | Environmental | Open in IMG/M |
| 3300017742 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21 | Environmental | Open in IMG/M |
| 3300017764 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11 | Environmental | Open in IMG/M |
| 3300017772 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10 | Environmental | Open in IMG/M |
| 3300017775 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17 | Environmental | Open in IMG/M |
| 3300017779 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16 | Environmental | Open in IMG/M |
| 3300017782 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19 | Environmental | Open in IMG/M |
| 3300017818 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017824 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017951 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017956 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300017985 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300018420 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly) | Environmental | Open in IMG/M |
| 3300019751 | Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW18Oct16_MG | Environmental | Open in IMG/M |
| 3300020055 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101411CT metaG (spades assembly) | Environmental | Open in IMG/M |
| 3300020165 | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1 | Environmental | Open in IMG/M |
| 3300020340 | Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX555960-ERR599119) | Environmental | Open in IMG/M |
| 3300020341 | Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX555908-ERR599066) | Environmental | Open in IMG/M |
| 3300020347 | Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994) | Environmental | Open in IMG/M |
| 3300020385 | Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965) | Environmental | Open in IMG/M |
| 3300020392 | Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX555916-ERR599163) | Environmental | Open in IMG/M |
| 3300020400 | Marine microbial communities from Tara Oceans - TARA_B100001115 (ERX555947-ERR598992) | Environmental | Open in IMG/M |
| 3300020403 | Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145) | Environmental | Open in IMG/M |
| 3300020428 | Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094) | Environmental | Open in IMG/M |
| 3300020430 | Marine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160) | Environmental | Open in IMG/M |
| 3300020439 | Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029) | Environmental | Open in IMG/M |
| 3300020441 | Marine prokaryotic communities collected during Tara Oceans survey from station TARA_078 - TARA_B100000524 (ERX556088-ERR599006) | Environmental | Open in IMG/M |
| 3300020470 | Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053) | Environmental | Open in IMG/M |
| 3300021364 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304 | Environmental | Open in IMG/M |
| 3300021425 | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284 | Environmental | Open in IMG/M |
| 3300022065 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2) | Environmental | Open in IMG/M |
| 3300022068 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2) | Environmental | Open in IMG/M |
| 3300022072 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3) | Environmental | Open in IMG/M |
| 3300023087 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG | Environmental | Open in IMG/M |
| 3300023109 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG | Environmental | Open in IMG/M |
| 3300023116 | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG | Environmental | Open in IMG/M |
| 3300024346 | Whole water sample coassembly | Environmental | Open in IMG/M |
| 3300025093 | Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025102 | Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025120 | Marine viral communities from the Pacific Ocean - LP-28 (SPAdes) | Environmental | Open in IMG/M |
| 3300025128 | Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025133 | Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025138 | Marine viral communities from the Pacific Ocean - LP-40 (SPAdes) | Environmental | Open in IMG/M |
| 3300025151 | Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes) | Environmental | Open in IMG/M |
| 3300025671 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes) | Environmental | Open in IMG/M |
| 3300025759 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes) | Environmental | Open in IMG/M |
| 3300025769 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes) | Environmental | Open in IMG/M |
| 3300025770 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_165m_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300025810 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300027188 | Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.709 (SPAdes) | Environmental | Open in IMG/M |
| 3300027525 | Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705 (SPAdes) | Environmental | Open in IMG/M |
| 3300027751 | Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713 (SPAdes) | Environmental | Open in IMG/M |
| 3300027757 | Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759 (SPAdes) | Environmental | Open in IMG/M |
| 3300027771 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300027774 | Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_5_50m (SPAdes) | Environmental | Open in IMG/M |
| 3300027779 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes) | Environmental | Open in IMG/M |
| 3300027996 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_6_MG | Environmental | Open in IMG/M |
| 3300028022 | Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750m | Environmental | Open in IMG/M |
| 3300029318 | Marine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289 | Environmental | Open in IMG/M |
| 3300029787 | Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172 | Environmental | Open in IMG/M |
| 3300031627 | Marine microbial communities from Western Arctic Ocean, Canada - AG5_33.1 | Environmental | Open in IMG/M |
| 3300032073 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416 | Environmental | Open in IMG/M |
| 3300034374 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4) | Environmental | Open in IMG/M |
| 3300034418 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4) | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| DelMOSum2010_102752933 | 3300000101 | Marine | MNIADKLIKGDIEPNTDELKFLLWNTLIQLSAYCDDVNTVEEESFNIEQMLSTLDVELGAHP |
| DelMOSpr2010_100526465 | 3300000116 | Marine | MKIADKILVDIEVSNDELKFLLWNTLIQLSAYCDDVTSVEEESFNIEQMLVTLDDQLGVTP* |
| DelMOSpr2010_100660816 | 3300000116 | Marine | MNIADKLIKGDIEPNTDELKFLLWNTLIQLSAYCDDVNTVEEESFNIEQMLSTLDVELGAHP* |
| DelMOWin2010_100306416 | 3300000117 | Marine | MKIAEKLINDVEVSDDELKFLLWNTLIQLSAYCDDVNTVEEESFNIEEMLEALDGELSIHQ* |
| DelMOWin2010_101624982 | 3300000117 | Marine | MKIAEKLINDVEVTNDELKFLLWNTLIQLSAYCDDVTSVEEESFNIEEALKALDGELSIHQ* |
| LP_A_09_P04_10DRAFT_10108018 | 3300000265 | Marine | MKIAEKLINDVEVSDDELKFLLWNTLIQLSAYCDDVTSVEEESFNIEQMLSTLDVELGAHP* |
| BpDRAFT_1010055611 | 3300000930 | Freshwater And Marine | MKIAEKLINDVEVSDDELKFLLWNTLIQLSAYCDDVISVEEESFNIEQMLSTLDVELGAHP* |
| JGI24005J15628_100788912 | 3300001589 | Marine | MNISERLIKGDIQPSEQELKFLLWNALIQLSAYCDDVTSVEEESYNIEQMLSALDVELGAHP* |
| KVRMV2_1000967282 | 3300002231 | Marine Sediment | MKIADKLINDVEVSDDELKFLLWNSLIQLSAYCDDVTTVEEESFNIEEMLEVLDGQLSMHQ* |
| JGI25132J35274_10436344 | 3300002483 | Marine | MNIADKLIKGEIEPNADELKFLLWNTLIQLSAYCDDVTSVEEESFNIEQMLSALDAEL |
| Ga0055584_1024843551 | 3300004097 | Pelagic Marine | MKIANKLLVDIDVSNDELKFLLWNTLIQLSAYCDDVTSVEEESFNIEQMLVTLDDQLGVTP* |
| Ga0075478_100460591 | 3300006026 | Aqueous | VKIAEKLMLDIEVTDDEYRFLLWNTLIQLSSYCDDVDTLEEESFNIEQMLVTLDDQLGVTP* |
| Ga0075443_101080671 | 3300006165 | Marine | MNIADKLIKGKIELDNDELKFLLWNSLIQLSAYCDDVTSVEEESFNIEEMLSTLDGQLSTNP* |
| Ga0098038_10741502 | 3300006735 | Marine | MKIAEKLINDVEVSDDELKFVLWNTLIQLSAYCDDVNTVEEESFNIEEMLEALDGELSMHQ* |
| Ga0098038_11561561 | 3300006735 | Marine | MKIADKLINDVEVSNDELKFLLFNTLIQLSPYDENVDCFEEESFNVDELLSVLDAELGVSP* |
| Ga0098037_10881791 | 3300006737 | Marine | MKIADKLINDVEVSDDELKFVLWNTLIQLSAYCDDVNTVEEESFNIEEMLEALDGELSMHQ* |
| Ga0098074_10468303 | 3300006790 | Marine | MKIAEKLINDVEVSKDEIKFLLWNTLIQLSTYEDNVDCVEEEAFNIEQVLGALDQDLSAHCA* |
| Ga0098055_11180243 | 3300006793 | Marine | DIEPNTDELKFLLWNTLIQLSAYCDDVISVEEESFNIEQMLSTLDVELGSHP* |
| Ga0098055_11501744 | 3300006793 | Marine | DIEPNTDELKFLLWNTLIQLSAYCDDVISVEEESFNIEQMLSTLDVELGVHP* |
| Ga0070749_101087845 | 3300006802 | Aqueous | MKIADKLLVDIPVDNDELKFLLWNTLIQLSSYCDNVDTLEDESFNIEQMLVTLDGQLGMVP* |
| Ga0070749_105760202 | 3300006802 | Aqueous | MEKMMKIADKLLVDIPVDNDELKFLLWNTLIQLSSYCDNVDTLEEESFNIEQMLVTLDDQLGMVP*LCAFVDLL* |
| Ga0070750_101910494 | 3300006916 | Aqueous | MKIADKLLVDIPVDNDELKFLLWNTLIQLSSYCDNVDTLEEESFNIEQMLVTLDDQLGMVP* |
| Ga0070747_13373032 | 3300007276 | Aqueous | MNIADKLIKGDIEPNTDELKFLLWNTLIQLSAYCDDVISVEEESFNIEQMLSTLDVELGAHP* |
| Ga0070745_12522441 | 3300007344 | Aqueous | MMKIADKILVDIEVSNDELKFLLWNTLIQLSAYCDDVTSVEEESFNIEQMLVTLDDQLGVTP* |
| Ga0070745_12935552 | 3300007344 | Aqueous | MMREITMKIADKLLVDIPVDNDELKFLLWNTLIQLSSYCDNVDTLEDESFNIEQMLVTLDGQLGMVP* |
| Ga0099850_13445791 | 3300007960 | Aqueous | MREITMKIADKLLVDIPVDNDELKFLLWNTLIQLSSYCDNVDTLEEESFNIEQMLVTLDDQLGMVP* |
| Ga0098052_11284126 | 3300008050 | Marine | MKISEKIINDIEVSGDEVKFLLWNTLIQLSAYCDDVTSVEEESFNIEQMLVSLEDQLDIHPQGAYGDQ* |
| Ga0102811_10144346 | 3300009024 | Estuarine | MNISERSIKGDIQPSEQELKFLLWNALIQLSAYCDDVTSVEEESYNIEQMLSTLDVELGAHP* |
| Ga0102829_11850131 | 3300009026 | Estuarine | KLINDVEVSDDELKFLLWNTLIQLSAYCDDVTSVEEESFNIEQMLSTLDVELGAHP* |
| Ga0102826_10048887 | 3300009054 | Estuarine | MNISERLIKGDIQPSEQELKFLLWNALIQLSAYCDDVTSVEEESFNIEQMLSTLDVELGAHP* |
| Ga0115566_101179181 | 3300009071 | Pelagic Marine | MNIADKLIKGDIEPNTDELKFLLWNTLIQLSAYCDDVTSVEEESFNIEQMLSTLDTELGVHP* |
| Ga0102814_100970675 | 3300009079 | Estuarine | MNISERLIKGDIQPSEQELKFLLWNALIQLSAYCDDVTSVEEESYNIEQMLSTLDVELGAHP* |
| Ga0117901_10708372 | 3300009103 | Marine | MNIADKLIKGSIELDNDELKFLLWNSLIQLSSHYDNVTTTEEESFNIEQMLSALETQQGTLV* |
| Ga0114994_109611042 | 3300009420 | Marine | MNIADKLIKGKIELDNDELKFLLWNSLIQLSAYCDDVTSVEEETFNIEQMLSALELDGQLSTNP* |
| Ga0114997_100694435 | 3300009425 | Marine | MNIADKLIKGKIELDNDELKFLLWNSLIQLSAYCDDVTSVEEESFNIEQMLSVLDGQLSTNP* |
| Ga0115545_11041532 | 3300009433 | Pelagic Marine | MKIAEKLINDVEVSDDELKFLLWNTLIQLSAYCDDVNTVEEESFNIEEMLEALDGELSMHQ* |
| Ga0115546_12930861 | 3300009435 | Pelagic Marine | KMNIADKLIKGDIEPNTDELKFLLWNTLIQLSAYCDDVTSVEEESFNIEQMLSTLDTELGVHP* |
| Ga0115568_101433553 | 3300009498 | Pelagic Marine | MNIADKLIKGDIEPNTDELKFLLWNTLIQLSAYCDDVISVEEESFNIEQMLSTLDTELGVHP* |
| Ga0115099_100290402 | 3300009543 | Marine | MNIADKLIKGDIEPSADELKFLLWNTLIQLSAYCDDVISVEEESFNIEQMLSTLDVELGVHP* |
| Ga0115011_102547972 | 3300009593 | Marine | MKIADKLINDVEVSNDELKFLLFNALIQLSPYDENVDCFEEESFNVDELLSVLDAELGVSP* |
| Ga0114933_107431892 | 3300009703 | Deep Subsurface | MKIAEKLINDVEVSDDELKFLLWNSLIQLSAYSDDVDTVEEESFNIEEMLEALDGELSMHQ* |
| Ga0115000_108501222 | 3300009705 | Marine | MNIADKLIKGKIELDNDELKFLLWNSLIQLSAYCDDVTSVEEESFNIEEMLSALDGQLSTNP* |
| Ga0098049_11497252 | 3300010149 | Marine | MKIADKLINDVEVSDDELKFLLWNSLIQLSAYSDDVNTVEEESFNIEEMLEALDGELSMHQ* |
| Ga0098049_12145672 | 3300010149 | Marine | MNIADKLIKGDIEPNTDELKFLLWNTLIQLSAYCDDVISVEEESFNIEQMLSTLDVELGVHP* |
| Ga0151674_10773226 | 3300011252 | Marine | MVMLATLIIYMENMMKIADKLINDVEVTNDELKFLLWNTLIQLSAYCDDVNTVEEESFNIEEMLYALDGELS |
| Ga0163109_105675782 | 3300012936 | Surface Seawater | MKIADKLINDVEVSDDELKFLLWNTLIQLSAYCDDVTSVEEESFNIEQVLKALDGELSAHQ* |
| Ga0163179_119979212 | 3300012953 | Seawater | MKIAEKLINDVEVSDDELKFLLWNSLIQLSAYCDDVTSVEEESFNIEQVLEALDGELSVHP* |
| Ga0180120_100797008 | 3300017697 | Freshwater To Marine Saline Gradient | MKIAEKLINDVEVSDDELKFLLWNTLIQLSAYCDDVNTVEEESFNIEEMLEAL |
| Ga0181399_10408311 | 3300017742 | Seawater | MNIADKLIKGDIEPNTDELKFLLWNTLIQLSAYCDDVISVEEESFNIEQMLSTLDAE |
| Ga0181385_12365262 | 3300017764 | Seawater | MKIADKLINDVEVSDDELKFLLWNTLIQLLAYCDDVTTVEEESFNIGQVLEALDGELSVH |
| Ga0181430_12291923 | 3300017772 | Seawater | MNIADKLIKGDIEPNTDELKFLLWNTLIQLSAYCDDVISVEEESFNIEQML |
| Ga0181432_11447072 | 3300017775 | Seawater | MNIADKLIKGDIELDNDELKFLLWNSLIQLSAYCDDVTSVEEESFNIEEMLSVLDSQLSTNP |
| Ga0181395_11629072 | 3300017779 | Seawater | ADKLIKGDIEPNTDELKFLLWNTLIQLSAYCDDVTSVEEESFNIEEMLEALDGELSMHQ |
| Ga0181380_12582612 | 3300017782 | Seawater | MNIADKLIKGDIEPNTDELKFLLWNTLIQLSAYCDDVISVEEESFNIEQMLSTLDAELGVHP |
| Ga0181565_108939072 | 3300017818 | Salt Marsh | MKIADKLLVDIPVDNDELKFLLWNALIQLSSYCDNVDTLEDESFNIEQMLVTLDDQLGMV |
| Ga0181552_102248113 | 3300017824 | Salt Marsh | MKIANKLLVDIPVDNDELKFLLWNALIQLSSYCDNVDTLEDESFNIEQMLVTLDDQLGMV |
| Ga0181577_101626175 | 3300017951 | Salt Marsh | MKIADKLLVDIPVDNDELKFLLWNTLIQLSSYCDNVDTLEDESFNIEQMLVTLDDQLGMV |
| Ga0181580_100184098 | 3300017956 | Salt Marsh | LKIAEKLMLDTELTDDEYRFLLWNTLIQLSSYCDNVDTLEDESFNIEQMLATLDDQLGVH |
| Ga0181576_107425991 | 3300017985 | Salt Marsh | MKIADKLLVDIPVDNDELKFLLWNTLIQLSAYCDEVDSIEEESFNIEQMLVTLDDQLGVT |
| Ga0181563_103151252 | 3300018420 | Salt Marsh | MKIADKLLVDIPVDNDELKFLLWNTLIQLSSYCDNVDTLEEESFNIEQMLATLDDQLGIV |
| Ga0194029_10144143 | 3300019751 | Freshwater | MKIADKLLVDIEVSNDELKFLLWNALIQLSAYCDEVDSVEEESFNIEQMLVTLDDQLGVT |
| Ga0181575_101483931 | 3300020055 | Salt Marsh | DKLLVDIPVDNDELKFLLWNALIQLSSYCDNVDTLEDESFNIEQMLVTLDDQLGMVP |
| Ga0206125_100471935 | 3300020165 | Seawater | MNIADKLIKGDIEPNTDELKFLLWNTLIQLSAYCDDVTSVEEESFNIEQMLSTLDTELGVHP |
| Ga0211594_11065213 | 3300020340 | Marine | MKIADKLINDVEVSNDELKFLLFNALIQLSPYDENVDSIEEESFNVEELLSVLEVDLGVTPC |
| Ga0211592_10591623 | 3300020341 | Marine | MKIADKLINDVEVSDDELKFLLWNSLIQLSAYCDDVTSVEEESFSIEQMLEALDGELSMH |
| Ga0211504_10354194 | 3300020347 | Marine | MNIADKLIKGDIEPNTDELKFLLWNTLIQLSAYCDDVTSVEEESFNIEQMLSTLDVELGAHP |
| Ga0211677_100321152 | 3300020385 | Marine | MNIADKLIKGDIEPNTDELKFLLWNTLIQLSAYCDDVISVEEESFNIEQMLSTLDVELGVHP |
| Ga0211666_101184691 | 3300020392 | Marine | MKIADKLINDVEVSNDELKFLLWNSLIQLSAYSDDVDTVEEESFNIEEMLEALDGELSMH |
| Ga0211636_100811415 | 3300020400 | Marine | MKIADKLINDVEVSDDELKFLLWNTLIQLSAYCDDVTSVEEESFNIEEMLEALDGELSMH |
| Ga0211532_103432411 | 3300020403 | Marine | MKIADKLINDVEVSDDELKFLLWNSLIQLSAYCDDVNTVEEESFSIEQMLEALDGELSMH |
| Ga0211521_102943923 | 3300020428 | Marine | MNIADKLINDVEVSDDELKFLLWNSLIQLSAYCDDVTSVEEESFNIEQVLEALDGELSIH |
| Ga0211622_103417411 | 3300020430 | Marine | MKIADKLINDVEVSDDELKFLLWNTLIQLSAYCDDVTSVEEESFNIEEMLEA |
| Ga0211558_104199393 | 3300020439 | Marine | MKIADKLLVDIEVSNDELKFLLWNTLIQLSAYCDDVTSVEEESFNIEQMLVTLDDQLGVT |
| Ga0211695_101201764 | 3300020441 | Marine | MKIADKIINDVEVSNDELKFLLFNALIQLSPYDENVDCFEEESFNVDELLSVLDAELGVS |
| Ga0211543_101032682 | 3300020470 | Marine | MKIADKLINDVEVSDDELKFLLWNSLIQLSAYCDDVNTVEEESFNIEEMLEALDGELSMH |
| Ga0213859_101269963 | 3300021364 | Seawater | MKIADKILVDIEVSNDELKFLLWNTLIQLSAYCDDVTSVEEESFNIEQMLVTLDDQLGVT |
| Ga0213866_101204917 | 3300021425 | Seawater | MKIADKLLVDIEVSNDELKFLLWNTLIQLSAYCDDVTSVEEESFNIEQMLVT |
| Ga0212024_10042254 | 3300022065 | Aqueous | LVDIPVDNDELKFLLWNTLIQLSSYCDNVDTLEDESFNIEQMLVTLDGQLGMVP |
| Ga0212024_10756422 | 3300022065 | Aqueous | VKIAEKLMLDIEVTDDEYRFLLWNTLIQLSSYCDDVDTLEEESFNIEQMLVTLDDQLGVT |
| Ga0212021_10139124 | 3300022068 | Aqueous | MKIADKLLVDIPVDNDELKFLLWNTLIQLSSYCDNVDTLEDESFNIEQMLVTLDGQLGMV |
| Ga0212021_11065862 | 3300022068 | Aqueous | MKIADKLINDVEVTNDELKFVLWNTLIQLSAYCDNVTSVEEESFNIEEALKALDGELSIH |
| Ga0196889_10177235 | 3300022072 | Aqueous | MKIAEKLINDVEVSDDELKFLLWNTLIQLSAYCDDVNTVEEESFNIEEMLEALDGELSIH |
| Ga0255774_103833411 | 3300023087 | Salt Marsh | MKIADKLLVDIPVDNDELKFLLWNTLIQLSAYCDEVDSIEEESFNIEQMLVTLD |
| (restricted) Ga0233432_101054182 | 3300023109 | Seawater | MNIADKLIKGDIEPSADELKFLLWNALIQLSAYCDDVTSVEEESYNIEQMLSTLDVELGAHP |
| Ga0255751_101805483 | 3300023116 | Salt Marsh | MKIADKMIKGELEPTNEELKFLLWNSLIQLSAYCDEVDCVEEEQFYINELLNVLDCQLGMVP |
| Ga0244775_100386123 | 3300024346 | Estuarine | MKIAEKLINDVEVSDDELKFLLWNTLIQLSAYCDDVTSVEEESFNIEQMLSTLDVELGAH |
| Ga0208794_10258782 | 3300025093 | Marine | MKIAEKLINDVEVSKDEIKFLLWNTLIQLSTYEDNVDCVEEEAFNIEQVLGALDQDLSAHCA |
| Ga0208666_10410052 | 3300025102 | Marine | MKIAEKLINDVEVSDDELKFVLWNTLIQLSAYCDDVNTVEEESFNIEEMLEALDGELSMH |
| Ga0208666_10788352 | 3300025102 | Marine | MKIADKLINDVEVSNDELKFLLFNTLIQLSPYDENVDCFEEESFNVDELLSVLDAELGVS |
| Ga0209535_10498756 | 3300025120 | Marine | MKIAEKLINDVEVSDDELKFLLWNSLIQLSAYCDDVNTMEEESFNIEQVLEALDGELSMH |
| Ga0208919_12302471 | 3300025128 | Marine | MKIAEKLINDVEVSDDELKFVLWNTLIQLSAYCDDVNTVEEESFNIEEMLEALDG |
| Ga0208299_11843731 | 3300025133 | Marine | MKISEKIINDIEVSGDEVKFLLWNTLIQLSAYCDDVTSVEEESFNIEQMLVSLEDQLDIHPQGAYGDQ |
| Ga0209634_10046402 | 3300025138 | Marine | MNISERLIKGDIQPSEQELKFLLWNALIQLSAYCDDVTSVEEESYNIEQMLSTLDVELGAHP |
| Ga0209645_11462242 | 3300025151 | Marine | MNIADKLIKGEIEPNADELKFLLWNTLIQLSAYCDDVTSVEEESFNIEQMLSALDAELGAHP |
| Ga0208898_10228018 | 3300025671 | Aqueous | MKIADKLLVDIPVDNDELKFLLWNTLIQLSSYCDNVDTLEEESFNIEQMLVTLDDQLGMV |
| Ga0208899_10044926 | 3300025759 | Aqueous | MKIAEKLINDVEVTNDELKFLLWNTLIQLSAYCDDVTSVEEESFNIEEALKALDGELSIH |
| Ga0208767_12469632 | 3300025769 | Aqueous | MEKMMKIADKLLVDIPVDNDELKFLLWNTLIQLSSYCDNVDTLEEESFNIEQMLVTLDDQLGMVPXLCAFVDLL |
| Ga0209362_12272962 | 3300025770 | Marine | MNIADKLIKGDIEPSADELKFLLWNTLIQLSAYCDDVTSVEEESFNIEQMLSTLDAELGVHP |
| Ga0208543_10832642 | 3300025810 | Aqueous | MKIAEKLINDVEVTNDELKFLLWNTLIQLSAYCDDVNTVEEESFNIEEMLEALDGELSIH |
| Ga0208921_10641693 | 3300027188 | Estuarine | MNISERLIKGDIQPSEQELKFLLWNALIQLSAYCDDVTSVEEESYNIEQMLSTLDVELG |
| Ga0208437_10236897 | 3300027525 | Estuarine | MKIAEKLINDVEVSDDELKFLLWNALIQLSAYCDDVTSVEEESYNIEQMLSTLDVELGAH |
| Ga0208304_101557155 | 3300027751 | Estuarine | MNISERLIKGDIQPSEQELKFLLWNALIQLSAYCDDVTSVEEESYNIEQML |
| Ga0208304_102027691 | 3300027751 | Estuarine | MKIAEKLINDVEVSDDELKFLLWNALIQLSAYCDDVTSVEEESYNIEQML |
| Ga0208671_101768332 | 3300027757 | Estuarine | MNISERLIKGDIQPSEQELKFLLWNALIQLSAYCDDVTSVEEESFNIEQMLSTLDVELGAHP |
| Ga0209279_100648863 | 3300027771 | Marine | MNIADKLIKGKIELDNDELKFLLWNSLIQLSAYCDDVTSVEEESFNIEE |
| Ga0209433_101214922 | 3300027774 | Marine | MKIADKLINDVEVSNDELKFLLWNSLIQLSAYSDDVDTVEEESFNIEQVLEALDGELSMH |
| Ga0209709_103088762 | 3300027779 | Marine | MNIADKLIKGKIELDNDELKFLLWNSLIQLSAYCDDVTSVEEESFNIEQMLSVLDGQLSTNP |
| (restricted) Ga0233413_100322025 | 3300027996 | Seawater | MNIADKLIKGDIEPNTDELKFLLWNTLIQLSAYCDDVISVEEESFNIEQMLSTLDVELGAHP |
| Ga0256382_10502213 | 3300028022 | Seawater | MKIAEKLINDVEVSDDELKFLLWNSLIQLSAYSDDVDTVEEESFNIEEMLEALDGELSMH |
| Ga0185543_10090826 | 3300029318 | Marine | MKIADKLINDVEVSNDELKFLLFNALIQLSPYDENVDCFEEESFNVDELLSVLDAELGVS |
| Ga0183757_10015268 | 3300029787 | Marine | MNIADKLIKGDIEPNTDELKFLLWNTLIQLSAYCDDVISVEEESFNIQQMLSTLDVELGAHP |
| Ga0302118_100183772 | 3300031627 | Marine | MNIADKLIKGKIELDNDELKFLLWNSLIQLSAYCDDVTSVEEESFNIEQMLSALDGQLSTQP |
| Ga0315315_100054803 | 3300032073 | Seawater | MNIADKLIKGDIEPNTDELKFLLWNTLIQLSAYCDDVTSVEEESFNIEEMLEALDGELSMHQ |
| Ga0348335_009448_4145_4333 | 3300034374 | Aqueous | MMKIADKILVDIEVSNDELKFLLWNTLIQLSAYCDDVTSVEEESFNIEQMLVTLDDQLGVTP |
| Ga0348335_025798_198_401 | 3300034374 | Aqueous | MMREITMKIADKLLVDIPVDNDELKFLLWNTLIQLSSYCDNVDTLEDESFNIEQMLVTLDGQLGMVP |
| Ga0348337_018624_167_364 | 3300034418 | Aqueous | MEKMMKIADKLLVDIPVDNDELKFLLWNTLIQLSSYCDNVDTLEEESFNIEQMLVTLDDQLGMVP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |