Scaffold Ga0307508_10000003

Overview

Basic Information

• Taxon OID: 3300031616
• Scaffold ID: Ga0307508_10000003
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 321602
• Total Scaffold Genes: 275
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 246 (89.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 45.0822
  • Long. (^o): -123.061

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002233	Metagenome / Metatranscriptome	580	Y
F034624	Metagenome / Metatranscriptome	174	Y
F085983	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307508_10000003165	F002233	AGGA	MQRVQSLLRSTRARIGRKLALIVAIAAVSLPDAGA
Ga0307508_1000000322	F034624	GAGG	MQLPEPPKIAAVEVVPAQPTEADRAAIAHMGVKQAYAVYVVKVRLKAKPPVTSMAWVLYVGDERVAKYWEYKDGIYFVVFDPQFFVTHKGKRLRFSQNDTEFFDTDMELAPAPSVAESSAIKLPLQADVLN
Ga0307508_10000003268	F085983	N/A	MGIASLHPSYALSQRRNENGGSKMKAKLIAVFVGVFIAVVSWVPLWIVEARDPYAMPVGLGLLAFAASCIGGVIALVGAIGLAIHVSRAAKTRS