Scaffold Ga0302119_10063272

Overview

Basic Information

• Taxon OID: 3300031606
• Scaffold ID: Ga0302119_10063272
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - AG5_Tmax
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1530
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 70.5467
  • Long. (^o): -122.9077
  • Depth (m): 450

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007828	Metagenome	344	Y
F042020	Metagenome / Metatranscriptome	159	N
F094399	Metagenome	106	N
F098066	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302119_100632721	F042020	AGG	MTKPQFDLFESTFEEWLDELSLMNHNESPHLRRILHELYMEGHEPLDARDALEVYHPEWHDELVYLEEHPILG
Ga0302119_100632722	F098066	AGGAG	LVDFNEDNMKSEIDQALKYLLDHEMISMEWDPVGEEMVYYMTAKQRGMPKPADWDTAM
Ga0302119_100632723	F094399	N/A	MSKRQQRTPQEIIAETEARLDRLRMRQAKTSAKSDPTLAPLLAHVDDLNKDIREAKKLLGEGPQSGNARISKHQAWIEKIQLEMSEAVDALEFAEANKAHTQAQVAEAMKAYLETSKEISAEG
Ga0302119_100632724	F007828	AGG	MLNSLTTIVRSNQNATMIRVGAGSSAIYTIYDLKTQSNTYTGTLNATKKAWNKYYRNSRQFVTKSGSNHRYMGA