Scaffold Ga0302131_1020766

Overview

Basic Information

• Taxon OID: 3300031594
• Scaffold ID: Ga0302131_1020766
• Source Dataset Name: Marine microbial communities from Western Arctic Ocean, Canada - CB9_20m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2743
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 77.9995
  • Long. (^o): -150.0065
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063078	Metagenome / Metatranscriptome	130	N
F100684	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0302131_10207661	F063078	N/A	RFSTAGLGFLHFMGWLSLKAGHLITRLCARILQSTKEDNDMSRLKTDSTNNELATKKTSAGVSFSDVPEHARSRVEWIEGCHSFDGQLPSFDELPIPAILYRLPVLHPDRPRGSRAMICSHGAKGRLIMLRAGAWTVTPMNDWRYAIFPDGDVGWIPKEVDLPQALFVNFRNDIN
Ga0302131_10207662	F100684	GAGG	MSDINGSPNGDIKSKVVTEAKPRVKVKHLTRAETREFNHRMGLSDSYLVIGNTIKGGHK