Scaffold Ga0307996_1000013

Overview

Basic Information

• Taxon OID: 3300031589
• Scaffold ID: Ga0307996_1000013
• Source Dataset Name: Marine microbial communities from David Island wharf, Antarctic Ocean - #35
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59143
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (16.90%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Southern Ocean
• Coordinates
  • Lat. (^o): -68.5781
  • Long. (^o): 77.9617
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070137	Metagenome / Metatranscriptome	123	N
F084248	Metagenome / Metatranscriptome	112	Y
F100941	Metagenome / Metatranscriptome	102	N
F103186	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307996_100001314	F103186	N/A	MRFPNTFTTENKITFYTQRKREMTKQFNKFSKLNKIEHSNKLKKEIEICEVELLNLNK
Ga0307996_100001317	F100941	N/A	MKELKEYMEAKKKANALKWMKVNGFNTIQGFTQSEFNESVKQIKRKTSTTRRSHSKGNLWTHNNLPQIKQDIL
Ga0307996_100001320	F070137	N/A	MDLYLSLENNELRNLHENFTDEVWLAFHQGEINDQDDFYNYLHEYIDNAVIYTASCESILSGNSEYHYEDHDLYGRPDNISQAAFACLYDYLTENDDTVVWSQLEEVLNESIQ
Ga0307996_100001368	F084248	GGA	MTLTDLKVYGLNSTALVASVQGVGITPILQTVVLILTIIYTSINIYKKICDK