Scaffold Ga0310915_10054280

Overview

Basic Information

• Taxon OID: 3300031573
• Scaffold ID: Ga0310915_10054280
• Source Dataset Name: Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2597
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001152	Metagenome / Metatranscriptome	764	Y
F052522	Metagenome	142	N
F079460	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310915_100542803	F079460	N/A	MSRRQFIPAVIVGLLLAALLLWLTLGWLLDAITLPVGWRRVCPPSIVDIA
Ga0310915_100542806	F001152	AGGAGG	MRGEFISEYQKLNSEDQKAFRRWLWANAVVGAILLTGLIALASSPVGESGATAQNATIHTQAKLP
Ga0310915_100542807	F052522	GAGG	MKYLLSILIIAVLASQATVWHSLATIRDAIQQTNAIILAACGSDERPCQVAAHRGQIELGEIMVRTRIS