Scaffold Ga0318515_10147509

Overview

Basic Information

• Taxon OID: 3300031572
• Scaffold ID: Ga0318515_10147509
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1253
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013577	Metagenome	270	Y
F024372	Metagenome	206	Y
F101949	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318515_101475091	F013577	AGGGGG	MRISTDCISRAEECRRLAKLAAKPEDWQHFIEMAATWDILAKQRPSDKLAETWALAEAIANGRKS
Ga0318515_101475092	F024372	GGAG	VRYLEDMKKATLAEFDKEEAEWREIAERQVLHLCAIEDPLPTPEELDELDPDDAISRIETVVENNTQLCFAVDGDTRSWGEMAVARVKARATAKNKTLT
Ga0318515_101475093	F101949	N/A	VKQPVTPVIETAAVEMIEQPAPDVITVTEVEETRQVS