Basic Information | |
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Family ID | F101949 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 102 |
Average Sequence Length | 38 residues |
Representative Sequence | PVAPVVETVAVEVIEQPAPGVITVTEVEETEVRKAS |
Number of Associated Samples | 70 |
Number of Associated Scaffolds | 102 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 3.12 % |
% of genes near scaffold ends (potentially truncated) | 91.18 % |
% of genes from short scaffolds (< 2000 bps) | 86.27 % |
Associated GOLD sequencing projects | 64 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.17 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (58.824 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.412 % of family members) |
Environment Ontology (ENVO) | Unclassified (54.902 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (56.863 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.17 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Watersheds Soil Vadose Zone Soil Tropical Forest Soil Agricultural Soil Permafrost Soil Forest Soil Soil Hardwood Forest Soil Tropical Forest Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0066388_1003109521 | 3300005332 | Tropical Forest Soil | PKVKQPVAPVVETVAAEVIEQPAPDVVTVTEVEATRQVS* |
Ga0066903_1037479962 | 3300005764 | Tropical Forest Soil | KAARKVKQPATPVIETVAVEVIEQPAPGVIAVTEVEETEIRKAS* |
Ga0066903_1066118872 | 3300005764 | Tropical Forest Soil | PVAPAVETVAAEVIEQPAPVIAVTEVEETEIRKAS* |
Ga0066903_1075780972 | 3300005764 | Tropical Forest Soil | KMKQPVAQVVETAAVEVVEQPAPGVITVTEVEEAEVRKAS* |
Ga0075015_1002393683 | 3300006102 | Watersheds | MKQPVAPAVDTVAVEVIEQSASGVITVTEVEETEVRQAS* |
Ga0075015_1008300041 | 3300006102 | Watersheds | PVTPVVETVAVEVIEQPAPGVITVTEIEETRKAS* |
Ga0070715_105532451 | 3300006163 | Corn, Switchgrass And Miscanthus Rhizosphere | KQPIAPVVETVAVEVIEQPAPGVITVTEVEETEIRKAS* |
Ga0075018_102060231 | 3300006172 | Watersheds | KVARKVRQPVAPVVEIVAAEVIEQPAPNVITVTEVEETRKAS* |
Ga0126376_101452512 | 3300010359 | Tropical Forest Soil | MKKAARPVAPAVETVAVEVIEQPAPDVITVTEVEETELRQAS* |
Ga0126372_108585831 | 3300010360 | Tropical Forest Soil | KVKQPIAPVVETVASEVIEHPATGVITEVGETEIRKAS* |
Ga0126378_102982783 | 3300010361 | Tropical Forest Soil | AQTRADEKAALPVAPSETVAVEVIEQPAPGVIAVTEVEETELRQAS* |
Ga0126378_109643081 | 3300010361 | Tropical Forest Soil | PVAQVVETAAVEVVEQPAPGVITVTEVEEAEVRKAS* |
Ga0126378_115089012 | 3300010361 | Tropical Forest Soil | APVVETVAVGVIEQPAPGVISVTEVEETEIRKAS* |
Ga0126377_109349491 | 3300010362 | Tropical Forest Soil | APVAPVVETVAVEVIEQPAPDVITVTEVEETEIRKAS* |
Ga0126379_110540613 | 3300010366 | Tropical Forest Soil | PVAPVVETVAVEVIGQPAPDVITVTEVEETEVRKAS* |
Ga0126379_130794981 | 3300010366 | Tropical Forest Soil | KPPAAPAIETAAVEVTELPAPGVITVSEVEETEVRKAS* |
Ga0126381_1005195781 | 3300010376 | Tropical Forest Soil | IEQPVVTAVETVAVEVIERPAPDVITVTEVEETRKAS* |
Ga0126381_1013325011 | 3300010376 | Tropical Forest Soil | PVAPAVETVAVEVIEQPAPGVITVTEVEETEVRQVS* |
Ga0126381_1039050091 | 3300010376 | Tropical Forest Soil | PVTPVIEIAAVEVIAKPAPDVITVTEVEANEVRKAS* |
Ga0126381_1040330052 | 3300010376 | Tropical Forest Soil | ARPVAPVVETVAVEVIEQPAPGVITVMEVEETEVRQAS* |
Ga0126383_105322694 | 3300010398 | Tropical Forest Soil | KVKRPVAPVVETVAVEVIGQPAPDVITVTEVGEAEVRKAS* |
Ga0126383_126461211 | 3300010398 | Tropical Forest Soil | QPVAPAVETVAAEVIEQPAPGVITVTEVEETEIRKAS* |
Ga0137365_104596891 | 3300012201 | Vadose Zone Soil | KAARKVKQAVTPVVETVAVEVLEQPAPTVTEVEETRKAS* |
Ga0137395_109705441 | 3300012917 | Vadose Zone Soil | KVKQAVTPVVETVAVDVIEQPAPTVTEVEETRKAS* |
Ga0126369_106117391 | 3300012971 | Tropical Forest Soil | KVKPPAAPAIETVAVEVIEQPAPVITVTEVEEAEIRKAS* |
Ga0126369_111745841 | 3300012971 | Tropical Forest Soil | PVKKAARPVAPVVGTVAVEVIEQPAPGVITVTEVEETEVR* |
Ga0120125_10482802 | 3300014056 | Permafrost | VKQPTAPVVETVAVEVIEQPVAVMEVEETLVREVSPDDPQ* |
Ga0182036_109554322 | 3300016270 | Soil | ARKVKRPVAPVGEIVAAEVMEQAAPGQITVTEIEETEVRKAS |
Ga0182041_101039881 | 3300016294 | Soil | RPVAPAVETVAVEVIEQPAPGVITVTEVEETEVRQAS |
Ga0182041_103812561 | 3300016294 | Soil | PVAPAVETVTVEVIEQPVPAVTATEVEETEIRQVS |
Ga0182041_111080741 | 3300016294 | Soil | ARPVAPAVETVAVEVIEQPAPGVITVTEVEETEVRQAS |
Ga0182033_108150911 | 3300016319 | Soil | IKQPIVAAVETVAVEVIEQPPPVIAVTEVEETEVRKAS |
Ga0182033_117726361 | 3300016319 | Soil | AARPVAPVVGTVAVEVIEQPAPGVITVAEVEETEVRQAS |
Ga0182033_118108231 | 3300016319 | Soil | RRIKQPVAPAVETVAAEVIEQPAPVIAVTGVEETEIRKAS |
Ga0182035_111396091 | 3300016341 | Soil | AARKVKQPVAPVVETVAVEVIEQPAPSVITVTEVEETRQVS |
Ga0182034_110777201 | 3300016371 | Soil | AARKVKEPVAPVVETVAVEVIEQPAPGVITVTEVEETEVRKAS |
Ga0182040_105529431 | 3300016387 | Soil | VKKAARPVAPVVGTVAVEVIEQPAPGVITVTEVEETEVRQAS |
Ga0182040_108802081 | 3300016387 | Soil | PIVAAVETVAVEVIEQPPPVIAVTEVEETEVRKAS |
Ga0182040_109271891 | 3300016387 | Soil | VKQPVAPVVLVETVAAEVTEQPAPGMITVTEIEETEVRKAS |
Ga0182038_120830532 | 3300016445 | Soil | KQPIAAVVETVAVEAIEQPAPGVITVTEVEETEVRRAG |
Ga0187820_12335261 | 3300017924 | Freshwater Sediment | TAPAVETVAVEVIEQPAPGVITVTEVEETELRKVS |
Ga0187822_101944022 | 3300017994 | Freshwater Sediment | VKQPVAPVIETVAVEAIKQPAPDVITVTEAGETEIRKAS |
Ga0187815_100545101 | 3300018001 | Freshwater Sediment | AARKVKQPAAPVVETVAVEMIEQPAPEVVEVTEVEKPEVRKAS |
Ga0187804_105381032 | 3300018006 | Freshwater Sediment | AAPTVETVAVEVIEHPAPGVITVTEVEETEVRQAS |
Ga0210399_101773153 | 3300020581 | Soil | AVRKVKQPVSSVVETVAVEVIEQPAPGVITVTEVEETRKAS |
Ga0210387_114393651 | 3300021405 | Soil | KPSAPSVETVVVDVIEQPAPNVITVTEVEETRKAS |
Ga0208604_10179162 | 3300027090 | Forest Soil | KQPAAPVVETVAAEAIEQPAPGVIAVTEVEETEVRKAS |
Ga0209178_13312791 | 3300027725 | Agricultural Soil | PVAPVVETVAVEVIEQPAPGVITVTEVEETEVRKAS |
Ga0209465_100473113 | 3300027874 | Tropical Forest Soil | AARRIEQPVVTAVETVAVEMIERPAPDAITVTEVEETRKAS |
Ga0307482_12359181 | 3300030730 | Hardwood Forest Soil | KVKQPVAPAVETVAVEVVEQPAPGVITVTEVEETRKAS |
Ga0170820_142635072 | 3300031446 | Forest Soil | KQPVTPVVETVAVEVLEQPASGVITVTEIEETRKAR |
Ga0170819_132037963 | 3300031469 | Forest Soil | CDLQPAAPVVETVAVEVIEQPAPGLITVTEVEETRQVS |
Ga0318516_106222872 | 3300031543 | Soil | PVKKAARPVAPVVGTVAVEVIEQPAPGVITVTEVEETEVRQAS |
Ga0318515_101475093 | 3300031572 | Soil | VKQPVTPVIETAAVEMIEQPAPDVITVTEVEETRQVS |
Ga0318555_106595981 | 3300031640 | Soil | KQPVAPVVESVAVEVIEQPAPGVITVTEVEETEIRKAS |
Ga0318542_105394592 | 3300031668 | Soil | VKQPVAPVVETVAAEVIEQPAPVTVSEVEEIRKAS |
Ga0318561_105320081 | 3300031679 | Soil | AARPVAPAVETVAVEVIEQPAPGVITVTEVEETDVRQAS |
Ga0310686_1015864671 | 3300031708 | Soil | MKQPPAVETVAVEVVEQPAPGVITVTEVEETELRK |
Ga0310686_1199038551 | 3300031708 | Soil | SLQQSKNVAVEVIEQPAPGVITVTEVEEAGVRQAS |
Ga0318496_101894811 | 3300031713 | Soil | KAARKVKQPIAPVVETVAVEVIEQLAPGVITVTEVEETRQVS |
Ga0306918_104185691 | 3300031744 | Soil | VKQPIAPVVETVATEVIEQPAPGIITVTEVEETEVRKAS |
Ga0318492_108242822 | 3300031748 | Soil | QPVTPVIETAAVEVIEQPAPDVITVTEVEETEVRKAS |
Ga0318494_109448202 | 3300031751 | Soil | KKVARKVRQPVTPVIETASVEMIEQPAPDVITVTEVEETRQVS |
Ga0307475_100421882 | 3300031754 | Hardwood Forest Soil | MKQPIAPVVETVAIEVIEQPAPGVITVTEVEETEVRQVN |
Ga0307475_109259481 | 3300031754 | Hardwood Forest Soil | RPAAPTVETAAVEVIEQPAPGVITVTEVEETEVRQAS |
Ga0318535_101248314 | 3300031764 | Soil | KTARKVKQPIAPVVETVAVEVIEQLAPGVIAVTEVEETRQVS |
Ga0318529_104531552 | 3300031792 | Soil | ERMKQPVAPILETVAAEVIEQPAPGVIAVTEIEETRQVS |
Ga0318576_105923031 | 3300031796 | Soil | VAPVVETVAAEVIEQPAPGQITVTEIEETEVRKAS |
Ga0318568_109909331 | 3300031819 | Soil | LPVAPSETVAVEVIEQPAPGVITVTEVEETELRQAS |
Ga0306919_101300281 | 3300031879 | Soil | RKERMKQPVTAVVETVAADVIEQPAPGVVAVTEVEETEVRKAS |
Ga0306919_103889971 | 3300031879 | Soil | KQPVTPVIETAAVEMIEQPAPDVITVTEVEETRQVS |
Ga0306919_109483801 | 3300031879 | Soil | PVTPVIETAAVEMIEQPAPDVITVTEVEKTEVRKAS |
Ga0318520_102616811 | 3300031897 | Soil | KTARKVKQPIAPVVEGVTAEVIEQSAPDVVTVTEVEAARQVS |
Ga0306923_101374741 | 3300031910 | Soil | KVKQPIAPVVETVAVEVIEQPAPGVITVTEVEETRQVS |
Ga0306923_101952331 | 3300031910 | Soil | AARPVAPAVETVAVEVIEQPAPGVITVTEVEETEVRQAS |
Ga0306923_106476101 | 3300031910 | Soil | AARPVAPVVETVAVEVIEQPAPGVITVTEVEETEVRQAS |
Ga0306923_110329581 | 3300031910 | Soil | QPIVAAVETVAVEVIEQPPPVIAVTEVEETEVRKAS |
Ga0306923_116183912 | 3300031910 | Soil | KAARPVAPAVETVAVEVIEQPAPGVITVTEVEETDVRQAS |
Ga0306923_122225912 | 3300031910 | Soil | PVAPVVETVAVEVIEQPAPGVITVTEVEETEVRQAS |
Ga0306921_109288051 | 3300031912 | Soil | ALCKSKQPVAPVVETVAAQVIEQPAPGVITVTEVAEISQVS |
Ga0306921_113220001 | 3300031912 | Soil | RMKQPVAPVVETVAVEVIEQPAPSVMTVTEAEQTRKAS |
Ga0310912_115058881 | 3300031941 | Soil | RPVAPVVETVAVEVIEQPAPGVITVTEVEETEVRQAS |
Ga0310913_110222611 | 3300031945 | Soil | GARKVKPPAAPAIETAAVEVIEQPAPGVITVTEVEETEVRKAS |
Ga0306926_113913211 | 3300031954 | Soil | VKQPATPVIETVAVEVIEQPVTVTEIEQAEIRKAS |
Ga0306926_119098691 | 3300031954 | Soil | QPAAPAVETVAAEVIEQPAPVIAVTEVEETEIRKAS |
Ga0318530_104126182 | 3300031959 | Soil | KKATRKERMKQHVAPVVEIVATEVIEQPAANVITVTEVEETRKAS |
Ga0307479_102827001 | 3300031962 | Hardwood Forest Soil | SVKKATRPVAPAVETVAVEVIEQPAPGVITVTEVVDETQVRQAS |
Ga0318507_103464722 | 3300032025 | Soil | PVKKAARPVAPVVETVAVEVIEQPAPGVITVTEVEETEVRQAS |
Ga0310911_101895543 | 3300032035 | Soil | ARKERMKQPVAPILETVAAEVIEQPAPGVIAVTEIEETRQVS |
Ga0318506_103983401 | 3300032052 | Soil | VKQPVAPVVESVAVEVIEQPAPGVITVTEVEETEIRKAS |
Ga0318533_101490631 | 3300032059 | Soil | VAPAVETVAVEVIEQPAPGVITVTEVEETEVRQAS |
Ga0318533_103778251 | 3300032059 | Soil | RKVKQPVTPVIETAAVEMIEQPAPDVITVTEVEETRQVS |
Ga0318505_104211112 | 3300032060 | Soil | VAPVVETVVVEVVEQPAPGVTTVTEVEETEIRKAS |
Ga0318505_104285321 | 3300032060 | Soil | KKAAPPVAPAVETAAVEVIEQPAPGVTTVTEVEETRQVT |
Ga0318540_100025839 | 3300032094 | Soil | KKAALKVKQPIAPVVETVAVEVIEQPAPGVITVTEVEETRQVS |
Ga0307471_1030148992 | 3300032180 | Hardwood Forest Soil | KVKQPVAPVVETTVAEVIEQPAPDVISVTEVEETDVRKAS |
Ga0307472_1006858322 | 3300032205 | Hardwood Forest Soil | KVARKVKQAVTPVVETVAVEVIEQPAPGVITVTEIEETRKAS |
Ga0306920_1000204901 | 3300032261 | Soil | KQPVAPVVETVAAEVIEQPAPDVVTVTEVEATRQVS |
Ga0306920_1000909961 | 3300032261 | Soil | KQPVAPVVETVAAEVIEQPAPGVVTVTEAEETHQAS |
Ga0306920_1043794702 | 3300032261 | Soil | VKKVARPVAPAVETVAVEVIEQPAPGVMTVTEVEETEVRQAS |
Ga0310914_117358091 | 3300033289 | Soil | AARKERMKQPVAPILETVAAEVIEQPAPGVIAVTEIEETRQVS |
Ga0318519_108854981 | 3300033290 | Soil | KERMKQHVAPVVEIVATEVIEQPAANVITVTEVEETRKAS |
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