NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308391_1003069

Scaffold Ga0308391_1003069


Overview

Basic Information
Taxon OID3300031567 Open in IMG/M
Scaffold IDGa0308391_1003069 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050623_t1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5791
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002372Metagenome / Metatranscriptome566Y
F004024Metagenome / Metatranscriptome456N
F008135Metagenome / Metatranscriptome338Y
F054900Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0308391_100306913F054900AGGAMISHGCANIGAMEYERAVVQLLVYLVTLAMLYVVDRWYRG
Ga0308391_10030693F004024AGGAMRSERDYVRQPSLNDDDMMILDARATLAAALARAVVGYSDSRVRALAWLAVATPRLYDRVAPIVESAAIRQSPGASRTLRDALRALSLEEYVRRRDERRSDR
Ga0308391_10030695F002229GGAGGMVTLLTADGVEEVDYTPSDAEIRASLDDPGLYGMVLGVVTWMRLSSGAGWWTVLFGKRLIVTLAPAGWCWVMDGLGNRGYWSATLSAVVADVCAMYGGVVED
Ga0308391_10030696F008135AGGAGGMRAVNDPRTERVLTEAGAGIARVLDARQRHAVVLAVDVVWYIVAALPPDEDMTCRDVVRLLRWFRNGFQEDGREDGDGDE
Ga0308391_10030698F002372AGGGGGMPTRREDALWSVVHQRASHLRALLDGLDDVDVSIAYELHYYPYAIVELLRIRDDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVFV
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