Scaffold Ga0307378_10295422

Overview

Basic Information

• Taxon OID: 3300031566
• Scaffold ID: Ga0307378_10295422
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1534
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032087	Metagenome / Metatranscriptome	181	Y
F058511	Metagenome / Metatranscriptome	135	N
F081224	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307378_102954221	F081224	N/A	EEKAQQWADQLKQVMESAEAKWLGDIPPLAEPSIGKRWSEIH
Ga0307378_102954222	F032087	GGA	MLPMPPETGRQIIMKFLQYEIARATTADLLRAANFLEGAREIRQGCRKQRTKARKDQQTGWRKHVDNALLW
Ga0307378_102954224	F058511	GAG	LYCATLPESTTYQLMTRYALKTMHEGHAFYLAAYYEKLPANNGVYLTLIKEDACSYVTIEKACQVARSLEDSMDCVPSIVEVSY