Scaffold Ga0318541_10005069

Overview

Basic Information

• Taxon OID: 3300031545
• Scaffold ID: Ga0318541_10005069
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5501
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000435	Metagenome / Metatranscriptome	1147	Y
F009082	Metagenome / Metatranscriptome	323	Y
F025238	Metagenome / Metatranscriptome	202	Y
F090024	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0318541_1000506910	F090024	GAG	VQTLAKVYEDRADEFSRAAQQTDDPVFCRLLLMLALQWKLAAQGEAKSKDASTSLASTQPQP
Ga0318541_1000506911	F009082	GAGG	MRAWVVGIAVVVAIGLIWSFAVMSNFVPVDGSGMSLAGISRPAE
Ga0318541_100050694	F025238	AGGGGG	MRVNIWIVLIVLIALFAVTRLLRYQQDRQRICADDPSASVCGR
Ga0318541_100050699	F000435	AGGAG	MSDEYDGLDATEKGWHWDRVLNRCRCLATKIANELRHKRSEHFVDKLSLADVHASLERAADVPSTVKSSQAQGRREKATAR