Scaffold Ga0318516_10106187

Overview

Basic Information

• Taxon OID: 3300031543
• Scaffold ID: Ga0318516_10106187
• Source Dataset Name: Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1590
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location

• Location Name: Puerto Rico: Rio Grande
• Coordinates
  • Lat. (^o): 18.321
  • Long. (^o): -65.8172
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000037	Metagenome / Metatranscriptome	4230	Y
F000794	Metagenome / Metatranscriptome	889	Y
F002001	Metagenome / Metatranscriptome	606	Y
F072026	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0318516_101061873	F000794	GGAGG	MAKVTTQLTAEERVILFCTATGISHAPVGITAHAMQSMAIKGFIVHNRETGDYALTDSGRATLLAILGDAGLT
Ga0318516_101061874	F000037	N/A	MTVLLLKRASAGRPSGDWNDDDFDVLADGVVVGRILKVHAAPAGSPWMWTLMFGYHENRMPTHGYAAAREAAMTAFAKSWRRE
Ga0318516_101061875	F002001	N/A	MLPAVARSYLSRKLTRPLPTKDGGTLRTVLDARAYMLRLSKDRDRSARWQRAAQLLLAKAHVGAVSRQLELALLYDGKLDVAK
Ga0318516_101061876	F072026	N/A	MRADITRERVFLEHALDAGYPSEVAESMLHTLEGALRIFEKHRQLVLDQLKRPPSE