Metagenome Family F072026

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072026
Family Type	Metagenome
Number of Sequences	121
Average Sequence Length	45 residues
Representative Sequence	EHALDAGHPLEVAESMLHALEGALRIFEKHRQLVLDQLKRPPSE
Number of Associated Samples	87
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.95 %
% of genes near scaffold ends (potentially truncated)	81.82 %
% of genes from short scaffolds (< 2000 bps)	71.07 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (51.240 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (54.546 % of family members)
Environment Ontology (ENVO)	Unclassified (66.116 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (52.893 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 65.91% β-sheet: 0.00% Coil/Unstructured: 34.09%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF01068	DNA_ligase_A_M	3.31
PF05721	PhyH	2.48
PF00072	Response_reg	1.65
PF13505	OMP_b-brl	1.65
PF07045	DUF1330	1.65
PF00717	Peptidase_S24	0.83
PF01042	Ribonuc_L-PSP	0.83
PF00589	Phage_integrase	0.83
PF14534	DUF4440	0.83
PF13924	Lipocalin_5	0.83
PF00872	Transposase_mut	0.83
PF11953	DUF3470	0.83
PF03797	Autotransporter	0.83
PF11684	DUF3280	0.83
PF08734	GYD	0.83
PF12800	Fer4_4	0.83
PF11026	DUF2721	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	3.31
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	3.31
COG5285	Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.48
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	1.65
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.83
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.83
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.24 %
Unclassified	root	N/A	48.76 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.24 %
Unclassified	root	N/A	48.76 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.24 %
Unclassified	root	N/A	48.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	41.32 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	4.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.76 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	32.23 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.76 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	19.01 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.13 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.18 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.13 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.65 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.65 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.83 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.18 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.13 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	1.65 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.65 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.83 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.18 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.13 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1.65 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.83 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.83 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.18 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.13 %
Rhizobium etli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli	1.65 %
Bradyrhizobium sp. LMTR 3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	0.83 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.83 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.18 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.13 %
Rhizobium etli CNPAF512	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli CNPAF512	1.65 %
Bradyrhizobium sp. LMTR 3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	0.83 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.83 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004114\|Ga0062593_101599085	Not Available	707	Open in IMG/M
3300005332\|Ga0066388_100650160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1669	Open in IMG/M
3300005332\|Ga0066388_101447506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1197	Open in IMG/M
3300005445\|Ga0070708_101858869	Not Available	558	Open in IMG/M
3300005471\|Ga0070698_100609215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1032	Open in IMG/M
3300005471\|Ga0070698_100818644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli CNPAF512	875	Open in IMG/M
3300005713\|Ga0066905_101281602	Not Available	658	Open in IMG/M
3300005764\|Ga0066903_100668765	Not Available	1821	Open in IMG/M
3300005764\|Ga0066903_105039624	All Organisms → cellular organisms → Bacteria → Proteobacteria	700	Open in IMG/M
3300006028\|Ga0070717_10069341	All Organisms → cellular organisms → Bacteria	2936	Open in IMG/M
3300006904\|Ga0075424_101563036	Not Available	700	Open in IMG/M
3300009143\|Ga0099792_10293565	All Organisms → cellular organisms → Bacteria	962	Open in IMG/M
3300010043\|Ga0126380_11556150	Not Available	588	Open in IMG/M
3300010046\|Ga0126384_10867171	Not Available	813	Open in IMG/M
3300010047\|Ga0126382_10171995	All Organisms → cellular organisms → Bacteria → Proteobacteria	1510	Open in IMG/M
3300010323\|Ga0134086_10426159	Not Available	537	Open in IMG/M
3300010361\|Ga0126378_12210506	Not Available	628	Open in IMG/M
3300010362\|Ga0126377_10784786	All Organisms → cellular organisms → Bacteria	1010	Open in IMG/M
3300010376\|Ga0126381_101729232	Not Available	903	Open in IMG/M
3300010398\|Ga0126383_10340334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1516	Open in IMG/M
3300010398\|Ga0126383_12675721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	582	Open in IMG/M
3300012199\|Ga0137383_10577787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	822	Open in IMG/M
3300012202\|Ga0137363_10416789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1120	Open in IMG/M
3300012350\|Ga0137372_10574425	Not Available	830	Open in IMG/M
3300012354\|Ga0137366_10330068	Not Available	1119	Open in IMG/M
3300012971\|Ga0126369_11160480	All Organisms → cellular organisms → Bacteria → Proteobacteria	862	Open in IMG/M
3300012971\|Ga0126369_13303664	Not Available	528	Open in IMG/M
3300016270\|Ga0182036_10901278	Not Available	725	Open in IMG/M
3300016294\|Ga0182041_10756833	Not Available	865	Open in IMG/M
3300016341\|Ga0182035_10193210	Not Available	1603	Open in IMG/M
3300016357\|Ga0182032_10664013	Not Available	872	Open in IMG/M
3300016387\|Ga0182040_10458733	Not Available	1011	Open in IMG/M
3300016404\|Ga0182037_10105622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2038	Open in IMG/M
3300016445\|Ga0182038_10041053	All Organisms → cellular organisms → Bacteria	3010	Open in IMG/M
3300018468\|Ga0066662_10342447	Not Available	1281	Open in IMG/M
3300021432\|Ga0210384_11590531	Not Available	559	Open in IMG/M
3300021478\|Ga0210402_11296317	Not Available	656	Open in IMG/M
3300025922\|Ga0207646_10600121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium etli → Rhizobium etli CNPAF512	988	Open in IMG/M
3300026304\|Ga0209240_1169932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	665	Open in IMG/M
3300028047\|Ga0209526_10163694	All Organisms → cellular organisms → Bacteria	1554	Open in IMG/M
3300031543\|Ga0318516_10106187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1590	Open in IMG/M
3300031545\|Ga0318541_10587095	Not Available	623	Open in IMG/M
3300031561\|Ga0318528_10005265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5565	Open in IMG/M
3300031572\|Ga0318515_10305435	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	853	Open in IMG/M
3300031573\|Ga0310915_10043935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2856	Open in IMG/M
3300031573\|Ga0310915_10054193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2599	Open in IMG/M
3300031573\|Ga0310915_10153240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1594	Open in IMG/M
3300031573\|Ga0310915_11015449	Not Available	578	Open in IMG/M
3300031640\|Ga0318555_10272633	Not Available	915	Open in IMG/M
3300031680\|Ga0318574_10517480	All Organisms → cellular organisms → Bacteria → Proteobacteria	699	Open in IMG/M
3300031680\|Ga0318574_10591728	Not Available	650	Open in IMG/M
3300031681\|Ga0318572_10965370	Not Available	506	Open in IMG/M
3300031724\|Ga0318500_10616788	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550	Open in IMG/M
3300031736\|Ga0318501_10700655	Not Available	558	Open in IMG/M
3300031744\|Ga0306918_10069957	All Organisms → cellular organisms → Bacteria → Proteobacteria	2405	Open in IMG/M
3300031763\|Ga0318537_10005384	All Organisms → cellular organisms → Bacteria	4188	Open in IMG/M
3300031768\|Ga0318509_10000892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9554	Open in IMG/M
3300031770\|Ga0318521_10598784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	666	Open in IMG/M
3300031771\|Ga0318546_10231566	All Organisms → cellular organisms → Bacteria → Proteobacteria	1268	Open in IMG/M
3300031771\|Ga0318546_11047049	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	574	Open in IMG/M
3300031777\|Ga0318543_10025890	Not Available	2238	Open in IMG/M
3300031781\|Ga0318547_10010081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4289	Open in IMG/M
3300031781\|Ga0318547_10424496	Not Available	817	Open in IMG/M
3300031782\|Ga0318552_10041530	Not Available	2153	Open in IMG/M
3300031793\|Ga0318548_10405437	Not Available	668	Open in IMG/M
3300031805\|Ga0318497_10431789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	737	Open in IMG/M
3300031819\|Ga0318568_10240027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1121	Open in IMG/M
3300031819\|Ga0318568_10314889	All Organisms → cellular organisms → Bacteria → Proteobacteria	972	Open in IMG/M
3300031833\|Ga0310917_11210333	Not Available	502	Open in IMG/M
3300031835\|Ga0318517_10575045	Not Available	506	Open in IMG/M
3300031846\|Ga0318512_10138940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1166	Open in IMG/M
3300031860\|Ga0318495_10367477	Not Available	636	Open in IMG/M
3300031894\|Ga0318522_10037896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1662	Open in IMG/M
3300031896\|Ga0318551_10210739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1077	Open in IMG/M
3300031896\|Ga0318551_10397945	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	783	Open in IMG/M
3300031896\|Ga0318551_10565904	Not Available	654	Open in IMG/M
3300031897\|Ga0318520_10292801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	979	Open in IMG/M
3300031897\|Ga0318520_10369192	Not Available	873	Open in IMG/M
3300031910\|Ga0306923_10759275	Not Available	1074	Open in IMG/M
3300031942\|Ga0310916_10569544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LMTR 3	963	Open in IMG/M
3300031946\|Ga0310910_10523492	All Organisms → cellular organisms → Bacteria → Proteobacteria	941	Open in IMG/M
3300031954\|Ga0306926_10048257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5082	Open in IMG/M
3300031959\|Ga0318530_10373811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	591	Open in IMG/M
3300032025\|Ga0318507_10216428	All Organisms → cellular organisms → Bacteria → Proteobacteria	828	Open in IMG/M
3300032025\|Ga0318507_10305156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	692	Open in IMG/M
3300032035\|Ga0310911_10038392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2438	Open in IMG/M
3300032035\|Ga0310911_10038879	All Organisms → cellular organisms → Bacteria → Proteobacteria	2426	Open in IMG/M
3300032035\|Ga0310911_10716138	Not Available	579	Open in IMG/M
3300032042\|Ga0318545_10150758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	826	Open in IMG/M
3300032043\|Ga0318556_10161903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1157	Open in IMG/M
3300032043\|Ga0318556_10276006	Not Available	878	Open in IMG/M
3300032044\|Ga0318558_10354082	All Organisms → cellular organisms → Bacteria → Proteobacteria	728	Open in IMG/M
3300032044\|Ga0318558_10680177	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300032051\|Ga0318532_10110593	Not Available	970	Open in IMG/M
3300032059\|Ga0318533_10123440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1813	Open in IMG/M
3300032059\|Ga0318533_10546361	Not Available	849	Open in IMG/M
3300032060\|Ga0318505_10388533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	659	Open in IMG/M
3300032060\|Ga0318505_10474051	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	591	Open in IMG/M
3300032065\|Ga0318513_10007909	All Organisms → cellular organisms → Bacteria	4013	Open in IMG/M
3300032076\|Ga0306924_11473217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	723	Open in IMG/M
3300032091\|Ga0318577_10001387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7954	Open in IMG/M
3300032261\|Ga0306920_100282274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2475	Open in IMG/M
3300032261\|Ga0306920_102391829	Not Available	729	Open in IMG/M
3300033289\|Ga0310914_10039047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3851	Open in IMG/M
3300033289\|Ga0310914_11554099	Not Available	565	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.17%
Host-Associated	Host-Associated	0.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.17%
Plants	Host-Associated → Plants	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	90.08%
Loam	Environmental → Terrestrial → Soil → Loam	9.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	67.77%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.13%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	54.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.22%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.13%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.13%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062593_1015990851	3300004114	Soil	VVIEHALDAGYPSAVAESMLHALEGALRIFEKHRGLILDELERQPSE*
Ga0066388_1006501603	3300005332	Tropical Forest Soil	MRADIARERVIAEHALDAGCPSKVAESMLHALEGALHIFEKHRELVLDQLKRRPSE*
Ga0066388_1014475063	3300005332	Tropical Forest Soil	HALDAGYPSEVAESMLHALEGALRIFERHRELVLDQLKRRPSK*
Ga0070708_1018588692	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	AGYPSAVAESMLHALEGALRIFEKHRGLILDELERQPSE*
Ga0070698_1006092152	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	LDAGYPSAVAESMLHALEGALRIFEKHRGLILDELERQPCE*
Ga0070698_1008186442	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	LDAGYPSAVAESMLHALEGALRIFEKHRGLILDELERQPSE*
Ga0066905_1012816021	3300005713	Tropical Forest Soil	LEVAESMLHALEGALRIFEKHRQLVLDQLKRPPSE*
Ga0066903_1006687652	3300005764	Tropical Forest Soil	MRAKEVAESMLHALEGALPIFEKHRELVLDQLKRRPSE*
Ga0066903_1050396241	3300005764	Tropical Forest Soil	LDAGHPLEVAESMLHALEGALRIFEKHRQLVLDQLKSPPSE*
Ga0070717_100693411	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LRADIARERVVIEHALDAGYPSAVAESMLHALEGALRIFEKHRGLILEELERQPSE*
Ga0075424_1015630362	3300006904	Populus Rhizosphere	MRADIARERVIIEHALDSGYPSAVAESMLHALEGALRIFEKHRELILDQLNRPCA*
Ga0099792_102935651	3300009143	Vadose Zone Soil	PSAVAESMLHALEGALRIFEKHRSLILDELERQPSE*
Ga0126374_114458772	3300009792	Tropical Forest Soil	KGHILRQRVMLKHVLDTGQPAELAGSMLHALEESLRAFEKHRQLILERLRRLSG*
Ga0126380_112294701	3300010043	Tropical Forest Soil	LKSHILRQRVILKLALDTGQSSELAASMLHALEGSLRAFEKHRQLILERLRRPSG*
Ga0126380_115561502	3300010043	Tropical Forest Soil	AGCPSEVAESMLHALEGALRIFEKHRELVLDQLKRQPSK*
Ga0126384_108671712	3300010046	Tropical Forest Soil	PSELAETTLRLFEDSLRIFEEHRELILDQLKRQPSK*
Ga0126382_101719951	3300010047	Tropical Forest Soil	IIEHALDAGYPSGVAESMLHALEGALRIFEKHRELVLDQLKRRLSE*
Ga0134086_104261591	3300010323	Grasslands Soil	RADIARERVVIEHALDAGYPSVVAESMLHALEAALRIFEKHRGLILDELERQPSE*
Ga0126378_122105061	3300010361	Tropical Forest Soil	DITRERVFLEHALDAGYPSEVAESMLHTLEGALRIFEKHRQLVLDQLKRPPSE*
Ga0126377_107847861	3300010362	Tropical Forest Soil	LDAGHPLEVAESMLHALEGALRIFEKHRQLVLDQLKPPLSE*
Ga0126377_134682531	3300010362	Tropical Forest Soil	LKGHILRQRVMLKHALDTGQPAELAESMLDALEGSLRAFEKHRQRILERLR*
Ga0126379_112167542	3300010366	Tropical Forest Soil	DLKGHILRQRVMLKHVLDTGQPAELAGSMLHALEESLRAFEKHRQLIFERLRRPSG*
Ga0126379_136615791	3300010366	Tropical Forest Soil	DLKGHILRQRVMLKHVLDTGQPAELAGSMLHALEGSLRAFEKHRQLILERLHRPSG*
Ga0126381_1017292321	3300010376	Tropical Forest Soil	LEVAESMLHALEAALRIFEKHRQLVLDQLKRPLSE*
Ga0126383_103403341	3300010398	Tropical Forest Soil	PSEVAESMLHALEGALRIFEKHRELVLDQLKRQPSK*
Ga0126383_126757212	3300010398	Tropical Forest Soil	EAAESMLHALEGALRIFEKHRQLVLDQLKRPPSE*
Ga0137383_105777873	3300012199	Vadose Zone Soil	PSAVAESMLHALEGALRIFEKHRGLILDELERQPSE*
Ga0137363_104167891	3300012202	Vadose Zone Soil	HALDAGYPSEVAESMLHALEGALRIFEKHRELVLDQLKRRPSE*
Ga0137372_105744253	3300012350	Vadose Zone Soil	RERVIIEHTLDAGYPSAVAESMLHALEAALRIFEKHRGLILDELERQPSE*
Ga0137366_103300683	3300012354	Vadose Zone Soil	SAVAESMLHALEAALRIFEKHRGLILDELERQPSE*
Ga0137361_119495021	3300012362	Vadose Zone Soil	RHIAELKSHILRQRVILKHVLDTGQPSELAESMLHALEGSLRAFEKHRQLILERLRRPAG
Ga0126375_108149971	3300012948	Tropical Forest Soil	VLLKDALDTGQPSELAESMLHALEGSLRIFEKHRQLVLEQLRRLAGNSRPR*
Ga0126369_111604802	3300012971	Tropical Forest Soil	LEVAESMLHALEGALRIFEKHRQLVLDQLKSPPSE*
Ga0126369_131088472	3300012971	Tropical Forest Soil	RHIAELKAHIVRQRVLLKDALDTGQPSELAESMLHALEGSLRIFEKHRQLILEQLRRPSE
Ga0126369_133036642	3300012971	Tropical Forest Soil	EVAESMLHALEGALRIFEKHRGLVLDQLKRRPSE*
Ga0182036_109012782	3300016270	Soil	DAGHPLEVAESMLHALEGALRIFEKHRQLVLDQLKRPPSE
Ga0182041_107568333	3300016294	Soil	GYPSAVAESMLHALEGALRIFEKHRGLLLDELKRQPHLHRVGE
Ga0182035_101932101	3300016341	Soil	ILEHALDAGHPLEVAESMLHALEGALRIFEKHRQLVLDQLKRPPSE
Ga0182032_106640132	3300016357	Soil	ARERVILEHALDAGHPLEVAESMLHALEGALRIFEKHRQLVLDQLKRPPSE
Ga0182040_104587332	3300016387	Soil	HPLEVAESMLHALEAALRIFEKHRQLVLDQLKRPLSE
Ga0182040_107843471	3300016387	Soil	HIAELKGHILRQRVMLKHVLDTGQPSELAESMLHALEGSLRAFEKHRQLILERLRRPSG
Ga0182037_101056221	3300016404	Soil	KHALDAGHPLEVAESMLHALEGALRIFEKHRQLVLDQLKSPPSE
Ga0182038_100410536	3300016445	Soil	RERVFLEHALDAGYPSEVAESMLHALEAALRIFEKHRELVLDQLKRRPSE
Ga0066662_103424471	3300018468	Grasslands Soil	DAGYPSAVAESMLHALEGALRIFEKHRGLILGELERQPSE
Ga0210384_115905311	3300021432	Soil	ADIARERVIIEHALDAGYPSAVAESMLHALEGALRIFEKHRGLILDELERQPSE
Ga0210402_112963171	3300021478	Soil	RVVIEHALDAGYPSAVAESMLHALEGALRIFEKHRGLILEELERQPSE
Ga0207646_106001211	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	LDAGYPSAVAESMLHALEGALRIFEKHRGLILDELERQPSE
Ga0209240_11699321	3300026304	Grasslands Soil	IIEHALDSGYPSVVAESMLHALEGALRIFEKHRELILDQLNRPSA
Ga0209526_101636943	3300028047	Forest Soil	IARERVVIEHALDAGYPSAVAESMLHALEGALRIFEKHRGLILEELERQPSE
Ga0318516_101061876	3300031543	Soil	MRADITRERVFLEHALDAGYPSEVAESMLHTLEGALRIFEKHRQLVLDQLKRPPSE
Ga0318541_105870951	3300031545	Soil	ALDSGYPSAVAESMLHALEGALRIFEKRELILDQLNRPSA
Ga0318528_1000526511	3300031561	Soil	PLEVAESMLHALEAALRIFEKHRQLVLDQLKRPPSE
Ga0318515_103054351	3300031572	Soil	VFLEHALDAGYPSEVAESMLHALEAALRIFEKHRELVLDQLKRRPSE
Ga0310915_100439358	3300031573	Soil	RERVFLEHALDAGYPSEVAESMLHTLEGALRIFEKHRQLVLDQLKRPPSE
Ga0310915_100541931	3300031573	Soil	MRADITRERVFLEHALDAGYPSEVAESMLHTLEGALRIFEKHRQLVLD
Ga0310915_101532405	3300031573	Soil	ARERVILEHALDAGHPLEVAESMLHALEGALRIFEKHRQLVLDQLKSPPSE
Ga0310915_110154491	3300031573	Soil	AEVAESMLHALEGALRIFEKHRELVLDQLKSRPSE
Ga0318555_102726331	3300031640	Soil	ERVFLEHALDAGHPSEVAESMLHTLEGALRIFEKHRELVLDQLKRRPSE
Ga0318555_107054311	3300031640	Soil	RQRVLLKDALDTGQPSELAESMLHALEGSLRIFEKHRQLILEQLRRPSE
Ga0318574_105174801	3300031680	Soil	GHPLEVAESMLHALEGALRIFEKHRQLVLDQLKSPPSE
Ga0318574_105917281	3300031680	Soil	EHALDAGYPAEVAESMLHALEGALRIFEKHRELVLDQLKSRPSE
Ga0318572_109653701	3300031681	Soil	ADIARERVILEHALDAGHPLEVAESMLHTLEGALRIFEKHRQLVLDQLKRPPSE
Ga0318500_106167881	3300031724	Soil	EHALDAGYPSEVAESMLHALEAALRIFAKHRELVLDQLKRRPSE
Ga0318501_107006551	3300031736	Soil	ILEHALDAGHPLEVAESMLHTLEGALRIFEKHRQLVLDQLKRPPSE
Ga0306918_100699573	3300031744	Soil	RERVILEHALDAGHPLEVAESMLHTLEGALRIFEKHRQLVLDQLKRPPSE
Ga0318537_100053847	3300031763	Soil	GHPLEAAESMLHALEAALRIFEKHRQLVLDQLKRPLSE
Ga0318509_1000089215	3300031768	Soil	LEVAESMLHALEAALRIFEKHRQLVLDQLKRPPSE
Ga0318509_102236842	3300031768	Soil	KAHIVRQRVLLKDALDTGQPSELAESMLHALEGSLRIFEKHCQLIFEQLRRPSE
Ga0318521_105987841	3300031770	Soil	VIEHALDAGYPSVVAESMLHALEGALRIFEKHRGLILDELERQPSE
Ga0318546_102315661	3300031771	Soil	PLEVAESMLHALEGALRIFEKHRQLVLDQLKSPPSE
Ga0318546_110470491	3300031771	Soil	RERVFLEHALDAGHPSEVAESMLHTLEGALRIFEKHRELVLDQLKRRPSE
Ga0318543_100258901	3300031777	Soil	PLEVAESMLHALEAALRIFEKHRQLVLDQLKRPLSE
Ga0318547_100100811	3300031781	Soil	GHPLEVAESMLHALEAALRIFEKHRQLVLDQLKRPPSE
Ga0318547_104244962	3300031781	Soil	MKADIARERVILEHALDAGHPLEVAESMLHALEGALRIFEKHRQLVLDQLKPPLSE
Ga0318552_100415301	3300031782	Soil	IQRVILEHALDVGHPLEAAESMLHALEAALRIFEKHRQLVLDQLKRPLSE
Ga0318548_104054372	3300031793	Soil	GHPLEVAESMLHALEGALRIFEKHRQLVLDQLKRPPSE
Ga0318497_104317893	3300031805	Soil	GYPSEVAESMLHTLEGALRIFEKHRQLVLDQLKRPPSE
Ga0318568_102400271	3300031819	Soil	PLEVAESMLHALEGALRIFEKHRQLVLDQLKPPPSE
Ga0318568_103148892	3300031819	Soil	RERVILKHALDAGHPLEVAESMLHALEGALRIFEKHRQLVLDQLKSPPSE
Ga0310917_100541971	3300031833	Soil	HIAELKAHIVRQRVLLKDALDTGQPSELAESMLHALEGSLRIFEKHCQLIFEQLRRPSE
Ga0310917_112103331	3300031833	Soil	LDSGYPSAVAESMLHALEGALRIFEKRELILDQLNRPSA
Ga0318517_105750451	3300031835	Soil	MRADITRERVFLEHALDAGYPSEVAESMLHTLEGALRIFEKHRQLVLDQLKRPP
Ga0318512_101389402	3300031846	Soil	LEVAESMLHALEGALRIFEKHRQLVLDQLKPPPSE
Ga0318495_103674771	3300031860	Soil	MRADIARERVFVEHALDAGYPAEVAESMLHALEGALRIFEKHRELVLDQLKSRPSE
Ga0318522_100378961	3300031894	Soil	LDAGHPLEVAESMLHALEGALRIFEKHRQLVLDQLKSPPSE
Ga0318551_102107393	3300031896	Soil	ILEHALDAGHPLEVAESMLHALEGALRIFEKHRQLVLDQLKPPPSE
Ga0318551_103979453	3300031896	Soil	RVFLEHALDAGYPSEVAESMLHTLEGALRIFEKHRQLVLDQLKRPPSE
Ga0318551_105659041	3300031896	Soil	VEHALDAGYPAEVAESMLHALEGALRIFEKHRELVLDQLKSRPSE
Ga0318520_102928011	3300031897	Soil	DVGHPLEVAESMLHALETALRIFEKHRQLVLDQLKRPLSE
Ga0318520_103691921	3300031897	Soil	PLEVAESMLHALEGALRIFEKHRQLVLDQLKRPPSE
Ga0306923_107592751	3300031910	Soil	LEVAESMLHALEAALRIFEKHRQLVLDQLKRPLSE
Ga0306921_106947902	3300031912	Soil	HILRQRVMLKHVLDTGQPSELAESMLHALEGSLRAFEKHRQLILERLRLPSR
Ga0310916_105695441	3300031942	Soil	DIARERVFLEHALDAGYPSEVAESMLHALEAALRIFEKHRELVLDQLKRRPSE
Ga0310913_108420921	3300031945	Soil	ILRQRVMLKHVLDTGQPSELAESMLHALEGSLRAFEKHRQLILERLRLPSR
Ga0310910_105234922	3300031946	Soil	PLEVAESMLHALEGALGIFEKHRQLVLDQLKPPLSE
Ga0306926_100482571	3300031954	Soil	PSVVAESMLHALEGALRIFEKHRGLILDELERQPSE
Ga0318530_103738113	3300031959	Soil	PVHCRNEGHRERVFLEHALDAGYPSEVAESMLHTLEGALRIFEKHRQLVLDQLKRPPSE
Ga0318507_102164282	3300032025	Soil	ILKHALDAGHPLEVAESMLHALEGALRIFEKHRQLVLDQLKSPPSE
Ga0318507_103051563	3300032025	Soil	RVILEHALDAGHPLEVAESMLHALEGALRIFEKHRQLVLDQLKSPPSE
Ga0310911_100383921	3300032035	Soil	RERVILEHALDAGHPLEVAESMLHALEGALRIFEKHRQLVLDQLKSPPSE
Ga0310911_100388791	3300032035	Soil	EHALDAGHPLEVAESMLHTLEGALRIFEKHRQLVLDQLKRPPSE
Ga0310911_102831441	3300032035	Soil	HIAELKAHIVRQRVLLKDALDTGQPSELAESMLHALEGSLRIFEKHRQLILEQLRRPSE
Ga0310911_107161381	3300032035	Soil	EHALDAGHPLEVAESMLHALEGALRIFEKHRQLVLDQLKRPPSE
Ga0318545_101507581	3300032042	Soil	VRQRVLLKDALDTGQPSELAESMLHALEGSLRIFEKHRQLILEQLRRPSE
Ga0318556_101619031	3300032043	Soil	LDAGHPLEVAESMLHALEGALRIFEKHRQLVLDQLKPPPSE
Ga0318556_102760061	3300032043	Soil	LDAGHPLEVAESMLHALEGALRIFEKHRQLVLDQLKRPPSE
Ga0318558_103540822	3300032044	Soil	HALDAGHPLEVAESMLHALEGALRIFEKHRQLVLDQLKSPPSE
Ga0318558_106801772	3300032044	Soil	YPSEVAESMLHALEAALRIFEKHRELVLDQLKRRPSE
Ga0318532_101105931	3300032051	Soil	GHPLEVAESMLHALEAALRIFEKHRQLVLDQLKRPLSE
Ga0318533_101234403	3300032059	Soil	RERVILEHALDAGHPLEVAESMLHALEGALRIFEKHRQLVLDQLKRPPSE
Ga0318533_105463612	3300032059	Soil	LEAAESMLHALEAALRIFEKHRQLVLDQLKRPLSE
Ga0318505_103885333	3300032060	Soil	VFLEHALDAGYPSEVAESMLHTLEGALRIFEKYRQLVLDQLKRPPSE
Ga0318505_104740512	3300032060	Soil	SEVAESMLHALEAALRIFEKHRELVLDQLKRRPSE
Ga0318513_100079091	3300032065	Soil	HPLEVAESMLHALEAALRIFEKHRQLVLDQLKRPPSE
Ga0306924_114732172	3300032076	Soil	MRADIARERVFIEHALDAGCPSEVAESMLYALEGALRIFEKHRELVLDLLKRRP
Ga0306924_116479473	3300032076	Soil	HILRQRVMLKHVFDTGQPSELAESMLHALEGSLRAFEKHRQLIFERLRRPSG
Ga0318577_1000138713	3300032091	Soil	LEHALDVGHPLEVAESMLHALEAALRIFEKHRQLVLDQLKRPPSE
Ga0306920_1002822745	3300032261	Soil	EMKADIARERVILKHALDAGHPLEVAESMLHALEGALRIFEKHRQLVLDQLKSPPSE
Ga0306920_1023918292	3300032261	Soil	SAVAESMLHALEGALRIFEKHRGLILDELERQPSE
Ga0310914_100390471	3300033289	Soil	RVLLKDALDTGQPSELAESMLHALEGSLRIFEKHRQLILEQLRRPSE
Ga0310914_115540991	3300033289	Soil	MRAEIARERAIVEHAVDAGYPSEVAESMLHALEGALRIFEKHRELVLDQLKRRPSE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F072026

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences