Scaffold Ga0308149_1007997

Overview

Basic Information

• Taxon OID: 3300031542
• Scaffold ID: Ga0308149_1007997
• Source Dataset Name: Metatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CBN3_331_5m (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1287
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location

• Location Name: Canada: Western Arctic Ocean
• Coordinates
  • Lat. (^o): 80.9595
  • Long. (^o): -132.1842
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019392	Metagenome / Metatranscriptome	230	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308149_10079972	F019392	GGAGG	MSVTPQFYEREFNGKMRDFVRITIKGMKDIFEAPVRPQDLSRFPEEWEAYKKTKGTKKIVGTSLKELPAMSEPRRIELELIGIESIEDLAKAEIDKLRSIGEPYVELQRIAELTMNAKKPSPKIVHKPLNIGIPDEPINDLPERS