Scaffold Ga0307380_10019218

Overview

Basic Information

• Taxon OID: 3300031539
• Scaffold ID: Ga0307380_10019218
• Source Dataset Name: Soil microbial communities from Risofladan, Vaasa, Finland - UN-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8233
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (35.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location

• Location Name: Finland: Risofladan, Vaasa
• Coordinates
  • Lat. (^o): 63.0472
  • Long. (^o): 21.7116
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009600	Metagenome	315	Y
F014228	Metagenome	264	N
F015723	Metagenome / Metatranscriptome	252	Y
F039112	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307380_1001921811	F009600	N/A	MRLSDSRQLTYKVVVGKVPSLNAFYASKHWTVRKNAKDKHCDEVLAQLYTMDCVPIHQVHITCLVNYRYDVDNSIMAVKFALDAFKKWGAIRDDSPKYVQQIILIHSEAIAKDTAEIIFEGVILE
Ga0307380_1001921812	F039112	N/A	MTLSFSQDVYTEMVQVQQAQIQALQNKIAELQARIDVMEQQSILFI
Ga0307380_1001921813	F015723	N/A	MSKIISITPTGQWQDLFKLEVRFDNGDFGTAFAKSQTPPYAVGEDVEYTKNEKGTVKIQRANAFGGGSSYTPSAPKTDERSASIIRQVALKSAVEYACAAKHDVNTILANAETFNAWMTGQSAAPASHTEHFANRNDPF
Ga0307380_100192189	F014228	N/A	MNGSTPLKLNPNRLVIWTILLTATLAVVSSCATVKPVLQSVVVRDTVIVTKTKYLTDTLQLYRDTTIYQDKVLLQMQYIDRKVYVEATCLPDTIRVTQTKILTKEKKQRGWTLEGGLTMLGLILVGAYIVKRWVDKLTE